RNA id: TCONS_00073005


Basic Information

Item Value
RNA id TCONS_00073005
length 2491
RNA type processed_transcript
GC content 0.43
exon number 11
gene id XLOC_037087
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21535885 ~ 21755910 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCCACGGTGCTGCAGATCTTGTGTGCTCGcgatttgtgtgtgtggatgtgattATAGTCAGTCAGCTCGTGCACTAGTCTAATGCAGGATACTGGAGCCAGCCCTTCACTCTCAGAGCTCACTTTCCAACTTCTCTCGCCCTTTTCCTCAGATTATCCAAGACCCCAAGAACGACAGCGAGTGCTTGAGCAACATCACGGAGTTTCTGAAGGGCTGCGCGGTGTTTCGCGTCGAGCCATTTGAGGCTGGTGACCTGCTTCAGGGCCACAACATTAGCAGAGTCCTCACTACACTGGTTGCCCTCAATAAAGTAACTGCAGATATTGGCATTGGCAGCGACTCTGTATGTACGCGTCACTCTTCCGCCCACCGGATCAAGTCCTTTGAATCGCTGGCCTCCCAGTCTTCACTGGGCCGATCTTCTAAATTGCTCCATAACCAGTTTCGCAGCCTTGTGAGTAACATTGGGGACATGACGGATAACAGTAACGCTCAGTTAGTGGTTAAAGCTCGCTTCAACTTCCAGCAGACCAATGAGGATGAGCTTACTTTCAGCAAAGGCGACCTCATCAGTGTCACTCGCACAGAAGAAGGGGGTTGGTGGGAAGGAATCCTCAACGGCAAGACGGGCTGGTTTCCGAGCAATTATGTCAAAGAGGTCAAAGGGTCAGACAAACAGGTGTCCCCAAAATCTGGAAATCTTAAAAGCCCTCCCAAAGGTTTTGATACCGCATCCATCAGTAAAACCTACTACAACCTGgTGCTACAGAACATATTAGAAACTGAAACAGAGTATTCAAGGGAACTCCAAAACCTTTTGACCAGCTACCTGAGACCTCTACAGATGACAGAAAGACTGAGCCCTGCAGATGTTAGTGTCATTCTCGGGAACCTGGAGGAGATCAGCACTTTCCAGCAGACTCTGGTCCAGTCACTGGAGGATCTCACCAAGCTTCCAGAGCTGCAGCAGAAGGTGGGAGGCTTCTTTCTCAACCTCATGCCTCAGATGAGGTCTCTTAATGTGTCTTACTGCTCCAACCATCCATCGACAGTCAATGTTCTCACCGTTCACAGTGAAGAACTTGGGGAGTTCATGGAGGCCAGGGGTGCATCTGTACCTGGTATTCTCACACTGACCTCGGGCCTCAGCAAACCCTTTATGAGGCTGGACAGATATCCTACATTACTGAAGGAGCTGGAGAGACACATGGAGGAGGGTCATCCAGACAGGACAGAAATTCAGAAATGTATGACCGCCTTCAAGAATCTCTCTGCACAATGTCAGGAGGTGCGGAAACGCAAGGAGCTGGAGCTTCAGATCCTGGCAGAGACCATTCGCCTCTGGGAGGGCGAGGACATCAAGACATTGGGTTCAGTACTGTATATGAGTCAGGCCATGGTACAGAACCACGGCTGTGAGGTGGGACAGCACCATATCtacttatttgaccaaaatcaGACaataaagtcagcatgaaattcATTGTTTTACACTAAATGGAGGGCTTATATCAGATTATGAACAATTTGTTCATGTATGCTTGCTGCAAATTTGACTTCATTTTAGTTATCTGAATAGAGTGGTGCAAGAATGACGTTAAAACCTGAAAGAATAATTTGCTGTGGGTGCCTTCGAGATTTACACATGGGGTCttataatgtgtgttttttttttttttttttcaatttacgaGAAAAATACTGTCTGGTAATAATAAAGACTTGCACCCCTGATGTTTATATCCACTTCTTTCAAAAGTTTAAACTtgttacttttattaaaattgtattattatttttattattacaaatgttttataaaatgcaCACATGAGCTTCAAAATTCAGGTTTTTACAGGAGTATGTCTAATTTTCATTACAGAGCAAAACCTTAAAGTAtcataaagttatttttaaagggcacctatgatgaaaatcgtcTTTTGTAAGCTGTTGGGACAGAACTGTGTAGGTCTACTGTGTTTACAGACATATTGGGGTAATACAAagacattaagttttttttttcatcatttccTGATTTTAAAATCCAAAGGattcaaatccctcccattttgagccCGACCgaaacgtgacgtaggagtgcagatTCCACGCCCACCGAATTAATTGACAGcggcgtattaacatgtctcggtagtaacgtgtataattatatcaacaagacaggatgtgcacaaagcaaccaggaataaaagatctgttcagctctctgtaatCATCAGTCATcctcaaatgtgatcaagaatgagttttaacagtgcttttttgtattgaattaaagtgattttactgtctttaacaccacagctgcatgtcagtacaactATAAAATACACTTCATTCCCAGTTTGTTTACATTGtcgggtttattttgtacattaacattatggatatccatacagcagtggatattaacatgtatcctgtcacaattgctgtgaaaaaaaagtaaacacgCGATGTG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060322-11 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in lamellipodium. Orthologous to human ARHGEF7 (Rho guanine nucleotide exchange factor 7).

Ensembl:

ensembl_id ENSDART00000132211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073002 lncRNA upstream 44154 21495873 ~ 21496699 (+) True XLOC_037086
TCONS_00072993 lncRNA upstream 184034 21353068 ~ 21356819 (+) True XLOC_037082
TCONS_00075091 lncRNA upstream 335381 21202272 ~ 21205472 (+) False XLOC_037077
TCONS_00075092 lncRNA upstream 335381 21202948 ~ 21205472 (+) False XLOC_037077
TCONS_00075090 lncRNA upstream 669796 20863668 ~ 20871057 (+) False XLOC_037073
TCONS_00075093 lncRNA downstream 10138 21569923 ~ 21712146 (+) False XLOC_037087
TCONS_00075094 lncRNA downstream 10756 21570541 ~ 21601633 (+) False XLOC_037087
TCONS_00075095 lncRNA downstream 10756 21570541 ~ 21755910 (+) False XLOC_037087
TCONS_00075096 lncRNA downstream 11564 21571349 ~ 21712146 (+) False XLOC_037087
TCONS_00075097 lncRNA downstream 154552 21714337 ~ 21732241 (+) False XLOC_037087
TCONS_00073001 mRNA upstream 131387 21407987 ~ 21409466 (+) True XLOC_037085
TCONS_00072999 mRNA upstream 135787 21401189 ~ 21405066 (+) False XLOC_037084
TCONS_00073000 mRNA upstream 137097 21402863 ~ 21403756 (+) True XLOC_037084
TCONS_00072998 mRNA upstream 139551 21383738 ~ 21401302 (+) False XLOC_037084
TCONS_00072997 mRNA upstream 141198 21383627 ~ 21399655 (+) False XLOC_037084
TCONS_00073008 mRNA downstream 162948 21722733 ~ 21724661 (+) True XLOC_037088
TCONS_00073009 mRNA downstream 233780 21793565 ~ 21816606 (+) False XLOC_037090
TCONS_00073010 mRNA downstream 236132 21795917 ~ 21816234 (+) False XLOC_037090
TCONS_00073012 mRNA downstream 259297 21819082 ~ 21824647 (+) False XLOC_037091
TCONS_00073013 mRNA downstream 259351 21819136 ~ 21824647 (+) False XLOC_037091
TCONS_00072979 other upstream 314721 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 336131 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 681360 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00072953 other upstream 1104338 20433812 ~ 20436515 (+) True XLOC_037067
TCONS_00072952 other upstream 1148819 20386745 ~ 20392034 (+) True XLOC_037066
TCONS_00073007 other downstream 11648 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073020 other downstream 424324 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 430273 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 433343 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073045 other downstream 831781 22391566 ~ 22447578 (+) False XLOC_037107

Expression Profile

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