XLOC_037097 (crygm7)


Basic Information

Item Value
gene id XLOC_037097
gene name crygm7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21993092 ~ 21994057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073025
atttatagttcCAGCAGTATTTGGCACTTGAACAGGAAAAAAACTTCAAAGATCCTTCAAACATGGGAAAGATTATCTTTTATGAAGATAGGAACTTCGGTGGCCGTTACCATGAGTGCATGAGTGACTGCGCTGACCTGCATTCCTACTTCAACCGCTGCCACTCTATCAGAGTGGAAAGCGGTTGCTTCATGGTCTACGACCGCACCAACTTTATGGGCCGTCAGTACTTTTTGAGACGTGGCGAATACCCTGATTACATGCGTACTATGGGAATGAATGATTGTGTCAGATCCTGTCGGATGATTCCACTGCACCATGGGTCCTTCAAAATGAGGCTCTACGAGCATTCAGACATGGGTGGCAGGATGATGGAGCTCATGGATGATTGCCCCAATCTCATGGATCGCTTCAACATGTCCGACTTCCATTCCTGTCATGTGATGGATGGGCATTGGCTCGTGTATGAGCAGCCCAACTATACGGGCAGGCAGTTCTACCTGAGGCCTGGCGAGTACAGGAGTTACAATGACTGGGGTGGTGTGACTTCCAGGATGGGCTCCATTAGACGAATCACGGATCTCTAATGAAAGGAGTCCTTGTGAAATGTCTCCTGTATGCCCTTTTTCACACACTAAATAAAATGGTGTCTGTGCTCAAGTGTTTTGAGTTTTGTTCTTGCACCTTTAACCTGGAGGGGTCATTACCAGATGATGACACTTGCTATTGGCTGCCAGACTGCTTTATGCTGTTCAGAGAACTGAATAAAATTAGAGAGATATTTCCTTCTATGAGA
>TCONS_00073026
AAAAAAACTTCAAAGATCCTTCAAACATGGGAAAGGAACTTCGGTGGCCGTTACCATGAGTGCATGAGTGACTGCGCTGACCTGCATTCCTACTTCAACCGCTGCCACTCTATCAGAGTGGAAAGCGGTTGCTTCATGGTCTACGACCGCACCAACTTTATGGGCCGTCAGTACTTTTTGAGACGTGGCGAATACCCTGATTACATGCGTACTATGGGAATGAATGATTGTGTCAGATCCTGTCGGATGATTCCACTGCACCATGGGTCCTTCAAAATGAGGCTCTACGAGCATTCAGACATGGGTGGCAGGATGATGGAGCTCATGGATGATTGCCCCAATCTCATGGATCGCTTCAACATGTCCGACTTCCATTCCTGTCATGTGATGGATGGGCATTGGCTCGTGTATGAGCAGCCCAACTATACGGGCAGGCAGTTCTACCTGAGGCCTGGCGAGTACAGGAGTTACAATGACTGGGGTGGTGTGACTTCCAGGATGGGCTCCATTAGACGAATCACGGATCTCTAATGAAAGGAGTCCTTGTGAAATGTCTCCTGTATGCCCTTTTTCACACACTAAATAAAATGGTGTCTGT
>TCONS_00073027
ATCATGAGTTGTTATAGTGGTGTTGACTTTATCTAATGGCTATGTGTTTTTACCATTGCTATAGATTATCTTTTATGAAGATAGGAACTTCGGTGGCCGTTACCATGAGTGCATGAGTGACTGCGCTGACCTGCATTCCTACTTCAACCGCTGCCACTCTATCAGAGTGGAAAGCGGTTGCTTCATGGTCTACGACCGCACCAACTTTATGGGCCGTCAGTACTTTTTGAGACGTGGCGAATACCCTGATTACATGCGTACTATGGGAATGAATGATTGTGTCAGATCCTGTCGGATGATTCCACTGCACCATGGGTCCTTCAAAATGAGGCTCTACGAGCATTCAGACATGGGTGGCAGGATGATGGAGCTCATGGATGATTGCCCCAATCTCATGGATCGCTTCAACATGTCCGACTTCCATTCCTGTCATGTGATGGATGGGCATTGGCTCGTGTATGAGCAGCCCAACTATACGGGCAGGCAGTTCTACCTGAGGCCTGGCGAGTACAGGAGTTACAATGACTGGGGTGGTGTGACTTCCAGGATGGGCTCCATTAGACGAATCACGGATCTCTAATGAAAGGAGTCCTTGTGAAATGTCTCCTGTATGCCCTTTTTCA

Function

symbol description
crygm7 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050516-8 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C).

Ensembl:

ensembl_id ENSDARG00000040736

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073025 False 796 mRNA 0.46 3 21993092 21994057
TCONS_00073026 False 598 processed_transcript 0.49 3 21993128 21993915
TCONS_00073027 True 623 lncRNA 0.48 2 21993188 21993891

Neighbor

gene id symbol gene type direction distance location
XLOC_037096 si:dkey-57a22.13 coding upstream 1876 21990058 ~ 21991216 (+)
XLOC_037095 CR536604.1 coding upstream 7096 21984109 ~ 21985996 (+)
XLOC_037094 si:dkey-57a22.11 coding upstream 9433 21977383 ~ 21983659 (+)
XLOC_037093 kctd12.1 coding upstream 147309 21843915 ~ 21845783 (+)
XLOC_037092 zgc:162944 coding upstream 161504 21826724 ~ 21831588 (+)
XLOC_037098 si:dkey-57a22.14 coding downstream 2258 21996315 ~ 21997149 (+)
XLOC_037099 crygm6 coding downstream 6755 22000812 ~ 22001778 (+)
XLOC_037100 si:dkey-57a22.15 coding downstream 9885 22003942 ~ 22004833 (+)
XLOC_037101 crygm1 coding downstream 17855 22011912 ~ 22012819 (+)
XLOC_037102 zgc:153846 coding downstream 23311 22017368 ~ 22018304 (+)
XLOC_037089 NA non-coding upstream 227357 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 496393 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 766960 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 787620 21202272 ~ 21205472 (+)
XLOC_037104 NA non-coding downstream 318676 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 582888 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 648329 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 994884 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 1052210 23046267 ~ 23046385 (+)

Expression


Co-expression Network