XLOC_037094 (si:dkey-57a22.11)


Basic Information

Item Value
gene id XLOC_037094
gene name si:dkey-57a22.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21977383 ~ 21983659 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073019
AAGAGAAGAAAATTTTTGAAGTGTTCGCGGCATTGTTTGGTTTTAAATATGTACAAACTGATTTAATGTTACGCTCAGTAATGTTAGTTGCTGTCAGGATAGACGCGTTGTAACATGTATAAAGACAAATATAATCAAAAATCAGCTCTAAGCGATAAAACGCTGACAATGGGATCTAAAGAGAAGGAAAACACAAGAATGGGCAAACAAACGGCATCTGTGTACGCTGCCAAGATAAAGACGAAAATACACAATACCTCGTCATTCTTCAAGCTCTCTTTGAAAAGCAATAACAAAGCTCTGGCCTTGGCTCTGGTTGCTCAGAAGCAGAGGAGCAGAGAACTGGAGGCAGAGGTGGTGAGGCTGAGGAAAGATGCACAGGCAACTCATTTTGATCTTGCTTTTCAGCgtcataaaaacaaacaactgTTTGCTGTTATAAAAGAGTTTTATGACTCCTCCCTGAACTCGATGTCAAAGGCCGTTGACATTTTTTGTAATGATGAGGTTCCAGACAGTGTTGACACTGAAGACAACACCAGTGAGGgtcagaATTTTGAAATGGAGAAAGAGGTTGAACGAGAGCCAAATAGACTAACATTGTGTCCACAACATCATAATAATGTTGAGTCTGAATCAGTGAATACTGCTATGGTCAAAGGAGCTACAGATAGTGATGCTCCCAACCAAAAGGAAGACAATTTAGCACTTCAAAACACCATAAATGACTCTAGAATGGATATTACCATGAGTGACAATCCTTCTGAAATTCTGACAGTGGAAACAAACGCAGGAACCTCTAGAGTTACAGATGAACATCAGATAAAGGAGAATGTGTGTCTGTCTGAAAAAGGTAGTGATGGTGTATCTGGAGTGGAAGACTCGCTAATTCAATTTTCATCAGATTATTCAATAGCTGTGCCAAAAGATATGACCACTGTGACACAGCAGTGCTCTACCACTGTTCAGAATGGCCAGGAAACAGAATTACTATCCGCTCGCAGGAAAACTCATATCACCTCTCGTTCTAAAAGGCGCACCTGTAAACCGAAAGAACCTAACCAAGATCTAAGAAAAACATATACAGTCTCCAAAGATCCTCCTAGTAATATTTTAAACGATTGTGGTAATGATCTTGAGCTTGAGAATTCTGAACCTTCGAGTAAAACggtaaaaaacaaagaaaaagagaCTAATGACACCCATGAACCAAGAAGAACATTTGTAGTTCACGATGGGTTAAAATCTGAGAAGAGCAGGAGGACCAAAGTCTCAAAACCTATGATGGATCTCAGTTCATTGTTTGTGGATGAAAATGTGGAGTCTGCCATTAGTGTATGCTCAGAAGATCCAGGTACTGATAAGCATCTCAGTgaagtcaaaacacacacaaataaaactcCAGCGCACCTGCTTTCTCAGTTTGAAAAGAACAATACACAGAAAAAGAGAGGAACTTATGTGATACAAACAAGTCACTCAATCAACAGGAGTTCAGCATTGACAGATTGCAATATATTTGATGATTCTAACAAAGCAAAAGGTTTACTGGAAGTAGTAGAAACCCAAACATCACCTCTAAATATTGGTTTAGATGTCACCGCACAACATTACAAGAAGCCAGAGCCTGTTTCTCATGACGGATCAAAGAAAAAAGCTTACAACAGGGAACATTTACAGGATTTGCAAATCGGTCTTGTAGAGGAAACCTCTGAATTTACATCAGTGCCGGGTAAAGCTAAGAAGCCTAGGAAAGAGGGAGCAGATAGAATTAAAGATCGGAATGTTCCAACAAAAGAAAAATCCAATTCATTAACAAAGAAACCAAAAAAATGTCCTGTGAATGTGGATGAAAATGTGTCCACCAGAAGTCCAGATGTGATTAGTCTTCAGAAAGCAGCTGAATGCAGGCCTTTGTCTAATGTTTTACTACCACCATGGAAATCTCATTGCTTAGCCGCAGAGGAGGATCTCCTAGATAATCACCATGCAGAAATGCCTGAAATAAGCTCTCCTTCATCTGTTGGCAAGGCTGATCAGACTGGCCATATCAACATGGATGTTCCTTACATAAGTCTGAATCAAACTAACCAAGAACAAGAGAGCAGATTCAGGAAAATGTATATGACTTCATCTTCTGACAATACGGCCTGTGAAGAAATGGCTGATGCTGCGTTTTCCATTTTTGAACAGGATCATCTCTCTAATAAAACAGATGTTTCTTCTGTAAAGAGCACTAGTCCATTTACCATGGATAAATATAATATGACTTTAGGCTGTTTTAGTGAGGACCTTCAGTTCACAGAAGAGAGACCTCCTTGGGAGGCCATTGAGGATTGCAGTGTGATGCTCTCAGATGAAAGCTGTGCTCACAGCCCTCAACCACAGACTAGAGTTCAGACTATCAACATTTATGAGGACCAGGACTCAAGCTTTAAGACTCAATTACCAGAAGAAGGAAGGGTAATGAAGAGTCTAACAAACACAGTTAATGCTGATTTAGGGAGACCGCGAAGACGAGCAACACCAGTCACCTACAAAGAGCCAAAAATCAACTGcAAAATGAGGCGAGGGGACAAGTACACTGATACACAATTCTTAAACTCTCCAGTGTTCAaagataaaaagaagaaaaagaagaaactcATTTCGGAGTGATAAACCCCCCTGTCCccatgacatgtttttttttttaagtttgtcttTTTATGTAATGAAAATGTTTAATAGTttgattttaaagtattttaccTGCAGCTGGTAATATTGCATTGGATCTCAGCTTtcctttttttgtgtatttaggaAACATTGTTtgaattttacatatttattttagtgtttaatAAAGAGAATCTGCTCTATGTGTAGTTTAACATTGATTCTACGTTGTAGCTGTGCTACATTCCTGCTAATCGTATAAAAGTCAGTTGTGTTCAGGACCCTTTACAGCAGCTTTCATATACATGCTATTGAGCAGTTGTATCTGTGTGTTATGTAACCAAACACTGGCCGACAGCGTTAAAGTGATTGAAGGACTGAATTAATAATTTAGAGGACTGTTCACATGAGATGACTACAGTTCTGAGATCAAGTAGGAGTGTCTGTTCTACCAGTTTATGCTGTCTGAAAGCAGCC

Function

symbol description
si:dkey-57a22.11 Predicted to be involved in homologous chromosome segregation; meiotic sister chromatid cohesion; and mitotic sister chromatid segregation. Predicted to act upstream of or within cell division and meiotic sister chromatid cohesion, centromeric. Predicted to be located in chromosome, centromeric region and nucleus. Predicted to be active in kinetochore. Orthologous to human SGO2 (shugoshin 2).

GO:

id name namespace
GO:0045132 meiotic chromosome segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0051177 meiotic sister chromatid cohesion biological_process
GO:0045143 homologous chromosome segregation biological_process
GO:0051754 meiotic sister chromatid cohesion, centromeric biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-423 Predicted to be involved in homologous chromosome segregation; meiotic sister chromatid cohesion; and mitotic sister chromatid segregation. Predicted to act upstream of or within cell division and meiotic sister chromatid cohesion, centromeric. Predicted to be located in chromosome, centromeric region and nucleus. Predicted to be active in kinetochore. Orthologous to human SGO2 (shugoshin 2).

Ensembl:

ensembl_id ENSDARG00000092651

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073019 True 3138 mRNA 0.39 8 21977383 21983659

Neighbor

gene id symbol gene type direction distance location
XLOC_037093 kctd12.1 coding upstream 131600 21843915 ~ 21845783 (+)
XLOC_037092 zgc:162944 coding upstream 145795 21826724 ~ 21831588 (+)
XLOC_037091 txndc9 coding upstream 152736 21819082 ~ 21824647 (+)
XLOC_037090 rev1 coding upstream 160777 21793565 ~ 21816606 (+)
XLOC_037089 NA coding upstream 211648 21761696 ~ 21765735 (+)
XLOC_037095 CR536604.1 coding downstream 450 21984109 ~ 21985996 (+)
XLOC_037096 si:dkey-57a22.13 coding downstream 6399 21990058 ~ 21991216 (+)
XLOC_037097 crygm7 coding downstream 9433 21993092 ~ 21994057 (+)
XLOC_037098 si:dkey-57a22.14 coding downstream 12656 21996315 ~ 21997149 (+)
XLOC_037099 crygm6 coding downstream 17153 22000812 ~ 22001778 (+)
XLOC_037086 BX649266.2 non-coding upstream 480684 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 751251 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 771911 21202272 ~ 21205472 (+)
XLOC_037067 CR456628.1 non-coding upstream 1540868 20433812 ~ 20436515 (+)
XLOC_037104 NA non-coding downstream 329074 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 593286 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 658727 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 1005282 22988941 ~ 22998060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09383289_09389713 NA coding CI01000009 null 9383289 ~ 9389713 (-)