XLOC_037093 (kctd12.1)


Basic Information

Item Value
gene id XLOC_037093
gene name kctd12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21843915 ~ 21845783 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073018
GCCTTTGGGAAGCCCTTTGCGCACAATCGCGAGTGACTGGCATCTTCAGCAGAGGAGACGCGATGGCTTTGGCAGACCCCGAGTGTGGAATATCAAACGGCGCTGATTCCGCGTCTCCGTTTTCCGTCATTATCGAACTTAACGTGGGAGGACAGGTGTATGTAACGCGGCACACCACTTTAATAGCCGTACCGGACTCTCTGCTGTGGAACATGTTCAGTAAGAAAACACCGGCTGAGCTGGCGCGGGACAGCAAAGGTCGTTTTTTTCTGGACCGGGACGGCTTTCTTTTCCGCTACATTTTAGACTACCTACGGGATCTAAACCTGGTTCTGCCGGACTATTTTCCAGAGAAAAGTAGATTACAGAGAGAGGCTGAGTTCTTTCAGCTGCGGGACCTTAGCAAGCTCTTGAGTCCCAAAATGAGTAAAGACAACTCCATCACTGACGAGATCTGCCAGAGTGACTCGGAGGAGCCGAGCGCGAGCGCGACTCCGGTGGTCGGACCCGAGACTTCTCGCACTCTGTCCGTCGCCAGCAGCGCACATTCTCCCTCCCTGGAGTCCAGAAAGTCTGGGTACATCACGGTTGGTTACCGAGGCTCGTACACAATGGGaagagacatacagacagacgcCAAATTCAGGCGGGTCGCGCGGATCACGGTTTGCGGGAAGACTTCTTTGGCAAAGGAGGTGTTTGGAGACACATTGAACGAAAGCAGAGACCCGGACCGGCCCCCAGAGAGGTACACCTCGCGCTATTATCTGAAATATAATTTCCTCGAACAGGCGTTTGACAAACTGTCAGAGTTTGGCTTCCAGATGGTCGCGTGCAGCTCCACGGGCACGTGCGCGTACTCCAGCAGCGACCCAAACGAGGACAAAGTCTGGACAAGCTACACAGAGTATGTTTTCTGTCGAGAATGAGCCAAAAGCGCTTTATTTAAGAGAGAGAGCGTGTGTACATAGGCGTCCTACTACGAGAGTGAAATTTTATCCGGTTAGGAGATGTGTATTGGAGTTTTCCTTCATTCACACAAAGCAAATATCTAGTTGTTTCCATAGAATTTTTAATGGCTGACTATAGGTATTGTTAGAAATAACAAACGCAGAATAACTTACTATCTCAGCACTTCCATTCAGAAATTCATAATTTCATTTTGTTTGCAGATAAAGATTTTTGTAAGTCAGATTCAAGGGCCTATTTGTAAAAAGATTCCCAGATGTGTTTTGTACTCGTTATTCTTTATGCATGCATCAACAAATGCTTCATCCGAACACTGCATAGAGAGCAGATTTGTAAGATTTTGATGAATGCTCTTAATGATATTTTTGTTACTGGGTGAATGATTTAAAAGATGATTCCACTTTAAGGAAAATCCATTTACTGAATCATTAAGCAACCATCTGGAAAGAGTTTGACATTCATCACTGCTAGATCTCAATGAGGCTTTCCCCTTAAATTCTGGTTCATCTTTTCAAATAgcttaaacaacaaaaaatagaactgctgccttaattttttgttgtaaaatatagtGGTGCCAAAGTTACCTGCAGTAATTCTTTGCACTTTTAGACTAATTTGCATTTCAACGTTACAGATTAAGAAATTTGAGTTGAATATCTTAATCGTGGAGTGGATGGAAACAATGACATTACAACTTTATTCTTTGGCAAGGCTTAAAAGCGCTTAAACCATTTTGTATTTTGCACACATTTTGCTTGGATGAAAAGTGGGAATTATTTGGTTTACCTTTTCTTCTCTATATTGCAACAAAGTGCTCCCTTTTACTCCAGCATTGTAAAGTGTCTCTGTTGTCTGTTCTAAGAGTTGATCATTCAATAAATTATAATCTGTCATAAT

Function

symbol description
kctd12.1 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in nervous system and notochord. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030902-5 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in nervous system and notochord. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).

Ensembl:

ensembl_id ENSDARG00000069843

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073018 True 1869 mRNA 0.43 1 21843915 21845783

Neighbor

gene id symbol gene type direction distance location
XLOC_037092 zgc:162944 coding upstream 12327 21826724 ~ 21831588 (+)
XLOC_037091 txndc9 coding upstream 19268 21819082 ~ 21824647 (+)
XLOC_037090 rev1 coding upstream 27309 21793565 ~ 21816606 (+)
XLOC_037089 NA coding upstream 78180 21761696 ~ 21765735 (+)
XLOC_037087 arhgef7a coding upstream 88005 21535885 ~ 21755910 (+)
XLOC_037094 si:dkey-57a22.11 coding downstream 131600 21977383 ~ 21983659 (+)
XLOC_037095 CR536604.1 coding downstream 138326 21984109 ~ 21985996 (+)
XLOC_037096 si:dkey-57a22.13 coding downstream 144275 21990058 ~ 21991216 (+)
XLOC_037097 crygm7 coding downstream 147309 21993092 ~ 21994057 (+)
XLOC_037098 si:dkey-57a22.14 coding downstream 150532 21996315 ~ 21997149 (+)
XLOC_037086 BX649266.2 non-coding upstream 347216 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 617783 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 638443 21202272 ~ 21205472 (+)
XLOC_037067 CR456628.1 non-coding upstream 1407400 20433812 ~ 20436515 (+)
XLOC_037104 NA non-coding downstream 466950 22312733 ~ 22313617 (+)
XLOC_037108 BX548053.3 non-coding downstream 731162 22576945 ~ 22577059 (+)
XLOC_037110 NA non-coding downstream 796603 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 1143158 22988941 ~ 22998060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G56204 NA non-coding CI01000009 null 9482094 ~ 9483970 (+)