RNA id: TCONS_00072997


Basic Information

Item Value
RNA id TCONS_00072997
length 1344
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_037084
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 21383620 ~ 21405066 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGTAGCTCCGCCTATTCCTCATGCACATGACAGTCTGAGGTCTGCTGATTTGGGGGCTCCTGGGAACCAACCAACCGACTGTGTTTTGACGTTTGTGAACGAGACTGCAATGAGTTCATTAAAAGAAAAGATCATCACTGTTGTCGGAAGCGGTCTGATTGGCCGCTCCTGGGCTATGGTTTTCCTGAGTGGAGGTTACAAGGTCAAACTCTATGACAACAAACCAGGACAGGCATCAGGGGCTATCGCAGAGATCAGGAAACAGCTTGAGGAGCTTCAACAAGCCAAAATGCTCAGAGGAAACCTCAGTGCCACAGAGCAGTTGAGTCGACTCAGCAGTCATGAGGACTTACAGCAGGCCTTAGATGGGGCTTTCTTTGTTCAGGAGAGTGTATTTGAAGATCTGGAAGCAAAGCAGAGCGTCTTTCATGCGGTGGAGGAGCTTGTCTCAGAAAGCGTGATCCTCAGCAGCTCCACATCCTGCCTGATGCCAAGCAATGTGTTCTCTCAAGTCCAGAACCGAACCCGCTGCATCGTATCCCATCCGGTAAACCCGCCCTACTATGTGCGTCTGGTGGAGTTGGTGCCACACCCCGAAACGCTGCCCGCTGTGATGGAGGTTGCTTACTCACTGATGACAGATGTGGGACAGGCACCTGTGCGTCTTAGGAAGGAGATAGATGGTTTTGCTTTAAACCGGGTTCAATATGCCATCATTGCTGAGTCCTGGAGGCTGGTTCAGGACGGAGTGATCTCAGTGAAGGACATCGATCTGGTGATGTCTGAGGGCCTGGGCATGCGCTACGCCTTCATAGGTCCCATTGAAACCATGCATCTCAACGCACCAGAAGGTATGAAAGATTATCTTCAGCGCTACAGTGAGGGCATGAAGAGGGTTCTTAATACTTTTGGGCCTGTTCCAGATTTTTCTGGAGAGCCCGCAGCTAGAGTTATAAAAGAGATCTGTGAAATGATTCCTGGCGAGCAGGAGCATCTATCAGCTAGGAGAGAGAGAAGAGATCAGCTGCTGATGGGACTAGCTAAACTCAAGGAATGAGGCTagtcaataaaatgaaaatgctttgaaatcaTGGTTTGAGCCCTTGTTGTTCTTGGTTGAATATTTCAGTTTCAGTGTCTGATTACAGAAGAAAATAACTGAAGCAAAAGCTAACTTTACAAATTTCCTCAGAATGTTGCTTTAGCTATGAAATTTACCATTGCattaacagtatttttaaaaggcTTACATTTGGAATTATTACTTGTTTCATTGAAATAGCTGAAGCACCTTCTTGCTTATGGTGATTTGAAATTTACAAATAAAGGGAAAATGAAACCA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0050104 L-gulonate 3-dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0070403 NAD+ binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
ko00040 Pentose and glucuronate interconversions

ZFIN:

id description
ZDB-GENE-060810-7 Predicted to enable L-gulonate 3-dehydrogenase activity. Predicted to act upstream of or within fatty acid metabolic process. Orthologous to human CRYL1 (crystallin lambda 1).

Ensembl:

ensembl_id ENSDART00000062656

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072993 lncRNA upstream 26808 21353068 ~ 21356819 (+) True XLOC_037082
TCONS_00075091 lncRNA upstream 178155 21202272 ~ 21205472 (+) False XLOC_037077
TCONS_00075092 lncRNA upstream 178155 21202948 ~ 21205472 (+) False XLOC_037077
TCONS_00075090 lncRNA upstream 512570 20863668 ~ 20871057 (+) False XLOC_037073
TCONS_00073002 lncRNA downstream 96218 21495873 ~ 21496699 (+) True XLOC_037086
TCONS_00073006 lncRNA downstream 158304 21557959 ~ 21558801 (+) False XLOC_037087
TCONS_00075093 lncRNA downstream 170268 21569923 ~ 21712146 (+) False XLOC_037087
TCONS_00075094 lncRNA downstream 170886 21570541 ~ 21601633 (+) False XLOC_037087
TCONS_00075095 lncRNA downstream 170886 21570541 ~ 21755910 (+) False XLOC_037087
TCONS_00072995 mRNA upstream 20126 21358977 ~ 21363501 (+) True XLOC_037083
TCONS_00072994 mRNA upstream 20526 21358941 ~ 21363101 (+) False XLOC_037083
TCONS_00072991 mRNA upstream 25786 21306902 ~ 21357841 (+) False XLOC_037082
TCONS_00072992 mRNA upstream 26820 21306934 ~ 21356807 (+) False XLOC_037082
TCONS_00072990 mRNA upstream 84346 21281652 ~ 21299281 (+) True XLOC_037081
TCONS_00072999 mRNA downstream 1534 21401189 ~ 21405066 (+) False XLOC_037084
TCONS_00073000 mRNA downstream 3208 21402863 ~ 21403756 (+) True XLOC_037084
TCONS_00073001 mRNA downstream 8332 21407987 ~ 21409466 (+) True XLOC_037085
TCONS_00073003 mRNA downstream 136230 21535885 ~ 21566673 (+) False XLOC_037087
TCONS_00073004 mRNA downstream 136467 21536122 ~ 21570566 (+) False XLOC_037087
TCONS_00072979 other upstream 157495 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00072978 other upstream 178905 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072967 other upstream 524134 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00072953 other upstream 947112 20433812 ~ 20436515 (+) True XLOC_037067
TCONS_00072952 other upstream 991593 20386745 ~ 20392034 (+) True XLOC_037066
TCONS_00073005 other downstream 141198 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073007 other downstream 171778 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073020 other downstream 584454 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073021 other downstream 590403 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073026 other downstream 593473 21993128 ~ 21993915 (+) False XLOC_037097

Expression Profile

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