Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073001 |
| length | 1480 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 1 |
| gene id | XLOC_037085 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 21407987 ~ 21409466 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010644 | cell communication by electrical coupling | biological_process |
| GO:0055008 | cardiac muscle tissue morphogenesis | biological_process |
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0003161 | cardiac conduction system development | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0008016 | regulation of heart contraction | biological_process |
| GO:0048050 | post-embryonic eye morphogenesis | biological_process |
| GO:0007154 | cell communication | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0005921 | gap junction | cellular_component |
| GO:0005922 | connexin complex | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0055077 | gap junction hemi-channel activity | molecular_function |
| GO:0005243 | gap junction channel activity | molecular_function |
| id | description |
|---|---|
| ko02000 | Transporters |
| id | description |
|---|---|
| ZDB-GENE-031217-3 | Enables gap junction hemi-channel activity. Acts upstream of or within several processes, including cardiac muscle tissue development; cell communication by electrical coupling; and post-embryonic eye morphogenesis. Predicted to be integral component of plasma membrane. Predicted to be part of connexin complex. Is expressed in several structures, including kidney; liver; pericardial region; retina; and spinal cord. Human ortholog(s) of this gene implicated in cataract 14 multiple types. Orthologous to human GJA3 (gap junction protein alpha 3). |
| ensembl_id | ENSDART00000145627 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072993 | lncRNA | upstream | 51168 | 21353068 ~ 21356819 (+) | True | XLOC_037082 |
| TCONS_00075091 | lncRNA | upstream | 202515 | 21202272 ~ 21205472 (+) | False | XLOC_037077 |
| TCONS_00075092 | lncRNA | upstream | 202515 | 21202948 ~ 21205472 (+) | False | XLOC_037077 |
| TCONS_00075090 | lncRNA | upstream | 536930 | 20863668 ~ 20871057 (+) | False | XLOC_037073 |
| TCONS_00073002 | lncRNA | downstream | 86407 | 21495873 ~ 21496699 (+) | True | XLOC_037086 |
| TCONS_00073006 | lncRNA | downstream | 148493 | 21557959 ~ 21558801 (+) | False | XLOC_037087 |
| TCONS_00075093 | lncRNA | downstream | 160457 | 21569923 ~ 21712146 (+) | False | XLOC_037087 |
| TCONS_00075094 | lncRNA | downstream | 161075 | 21570541 ~ 21601633 (+) | False | XLOC_037087 |
| TCONS_00075095 | lncRNA | downstream | 161075 | 21570541 ~ 21755910 (+) | False | XLOC_037087 |
| TCONS_00072999 | mRNA | upstream | 2921 | 21401189 ~ 21405066 (+) | False | XLOC_037084 |
| TCONS_00073000 | mRNA | upstream | 4231 | 21402863 ~ 21403756 (+) | True | XLOC_037084 |
| TCONS_00072998 | mRNA | upstream | 6685 | 21383738 ~ 21401302 (+) | False | XLOC_037084 |
| TCONS_00072997 | mRNA | upstream | 8332 | 21383627 ~ 21399655 (+) | False | XLOC_037084 |
| TCONS_00072996 | mRNA | upstream | 10215 | 21383620 ~ 21397772 (+) | False | XLOC_037084 |
| TCONS_00073003 | mRNA | downstream | 126419 | 21535885 ~ 21566673 (+) | False | XLOC_037087 |
| TCONS_00073004 | mRNA | downstream | 126656 | 21536122 ~ 21570566 (+) | False | XLOC_037087 |
| TCONS_00073008 | mRNA | downstream | 313267 | 21722733 ~ 21724661 (+) | True | XLOC_037088 |
| TCONS_00073009 | mRNA | downstream | 384099 | 21793565 ~ 21816606 (+) | False | XLOC_037090 |
| TCONS_00073010 | mRNA | downstream | 386451 | 21795917 ~ 21816234 (+) | False | XLOC_037090 |
| TCONS_00072979 | other | upstream | 181855 | 21214940 ~ 21226132 (+) | True | XLOC_037078 |
| TCONS_00072978 | other | upstream | 203265 | 21204616 ~ 21204722 (+) | True | XLOC_037077 |
| TCONS_00072967 | other | upstream | 548494 | 20857720 ~ 20859493 (+) | False | XLOC_037073 |
| TCONS_00072953 | other | upstream | 971472 | 20433812 ~ 20436515 (+) | True | XLOC_037067 |
| TCONS_00072952 | other | upstream | 1015953 | 20386745 ~ 20392034 (+) | True | XLOC_037066 |
| TCONS_00073005 | other | downstream | 131387 | 21540853 ~ 21559785 (+) | False | XLOC_037087 |
| TCONS_00073007 | other | downstream | 161967 | 21571433 ~ 21712146 (+) | False | XLOC_037087 |
| TCONS_00073020 | other | downstream | 574643 | 21984109 ~ 21985996 (+) | True | XLOC_037095 |
| TCONS_00073021 | other | downstream | 580592 | 21990058 ~ 21991212 (+) | False | XLOC_037096 |
| TCONS_00073026 | other | downstream | 583662 | 21993128 ~ 21993915 (+) | False | XLOC_037097 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000009_09747388_09751284.mRNA | True | 2148 | mRNA | 0.47 | 4 | CI01000009 | 9746969 ~ 9752056 (-) |
| bowfin (Amia calva) | AMCG00014521 | True | 978 | mRNA | 0.54 | 2 | CM030128.1 | 16300633 ~ 16307473 (-) |
