RNA id: TU41976



Basic Information


Item Value
RNA id TU41976
length 416
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G31589
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 32785782 ~ 32786197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTGTGCTATTTACGAATACGATATGGAATACATAATAtaacatatttataaatatatggTCACcattcaaaaaaagaaacataataCAAAAACTATTGCATGTAAAACAGGTAATTTACAGAATTGGACAAGTATTGCACAGATAAAGACttcttgtttttctgtgttgtaaTTTCACACAAAATGAGTTTCATTTTTTAGGCACCATTTCCTTCATTtcaaaatacatacagtatacacatgGATATTTACACACAGCACAGACAATACATACATGTTCATTATCAGgattatttttacacatttttatttaatgtccATTTGGTCTTTTGACTCAGTCACACACTGAGAACTGTTAGTCTGAATGCTCTGTCTCTTGGACACAAAGGACAACTCTTTATTGCCCTCACCTGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41964 lncRNA downstream 33643 32751110 ~ 32752139 (-) True G31581
TU41962 lncRNA downstream 35034 32750531 ~ 32750748 (-) True G31580
TU41958 lncRNA downstream 35260 32685389 ~ 32750522 (-) True LOC120556040
XR_005638785.1 lncRNA downstream 35329 32685368 ~ 32750453 (-) False LOC120556040
XR_005638834.1 lncRNA downstream 255291 32522222 ~ 32530491 (-) True LOC120556294
TU41984 lncRNA upstream 29040 32815237 ~ 32817318 (-) True G31597
TU42024 lncRNA upstream 148514 32934711 ~ 32997421 (-) True G31624
XR_005638752.1 lncRNA upstream 191739 32977936 ~ 32979391 (-) False LOC120555772
XR_005638751.1 lncRNA upstream 191869 32978066 ~ 32979392 (-) True LOC120555772
TU42039 lncRNA upstream 226683 33012880 ~ 33018742 (-) True G31636
XM_039795303.1 mRNA downstream 12060 32763628 ~ 32773722 (-) True LOC120556015
XM_039795372.1 mRNA downstream 24676 32756857 ~ 32761106 (-) True gnpnat1
XM_039794372.1 mRNA downstream 612234 32169844 ~ 32173548 (-) True nudt19
XM_039794365.1 mRNA downstream 634755 32137045 ~ 32151027 (-) True zdhhc7
XM_039794804.1 mRNA downstream 652801 32123659 ~ 32132981 (-) True terfa
XM_039795007.1 mRNA upstream 31400 32817597 ~ 32885869 (-) True nfatc3a
XM_039795006.1 mRNA upstream 31400 32817597 ~ 32877954 (-) False nfatc3a
XM_039795629.1 mRNA upstream 422947 33209144 ~ 33214697 (-) True tspan3b
XM_039795630.1 mRNA upstream 424119 33210316 ~ 33214699 (-) False tspan3b
XM_039795499.1 mRNA upstream 432797 33218994 ~ 33219856 (-) True nmbb
TU41279 other downstream 2253666 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 3324546 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 3516618 29257978 ~ 29269164 (-) False LOC120555471
XR_005638769.1 other downstream 3938817 28770001 ~ 28846965 (-) True mafa
TU41994 other upstream 105302 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 556050 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 652266 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 1020739 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 1020739 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile