RNA id: XM_039794005.1


Basic Information

Item Value
RNA id XM_039794005.1
length 1821
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120555331
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33630063 ~ 33635491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGTACTGGATAGCAGAGGAACTGAACAGCTGTAGTGTGTCGGTGAAGCTGCTGCCTTGCAATACTTACAGCAGCCTACGTATGGAAAACCAACAGGCATTAATTGCAACGAAGCTTCCGTCCTGCGGTGGTTTTTAAATACTTGGGGTCGCAGAAGTGCGCAAAACACTGAACCAACACAGTCCTCTTTCCGCTGCACATGAACCACTGATCTTCACAGTGGATGAGTAGAATGTTGCTTCCTCTGCAAGCCTCAGAAAATGAACACCACTCTGTGTGACTCTGCAGCAACCAGGTATCACCTGACAACAGACCACCAACTGAACGCTAGCTGCAACAACTCCTCGCCCTTTTCCAACTGGACCGTGGGGGGTGATGCCCTGCAGCTGCCCACATTCACCACAGCAGCCAAAATCAGAGTGATTATTACCTGCATTCTATGTGGCATATCTGCATTTTGCAACCTTGCTGTGCTTTGGGCGGCACACAGAGATGGGAAACGCAAATCCCACGTCAGGGTGCTGATAATCAACCTGACGGTGGCTGATCTGCTGGTCACCTTCATTGTGATGCCTGTGGATGCCGTGTGGAACATCACAGTCCAGTGGCTCGCTGGGGACTTTGCCTGCAGGCTACTGATGTTTCTTAAGCTGCAGGCGATGTACTCCTGCGCCTTTGTCACCGTGGTGATCAGTCTGGATAGGCAGTCAGCCATCCTCAACCCCCTGGCTATCAATAAAGCCAGAAAGAGGAACAGAGTCATGCTGACTGTGGCGTGGGGCATGAGTGTCATGCTGTCAGTCCCTCAGATGTTCCTTTTTCACAATGTGACCATCATTCACCCCAAGGACTTCACTCAGTGTGCCACACGTGGAAGTTTTGTCACTCACTGGCATGAAACGGCCTACAACATGTTCACTTTTTCCTGCCTGTTCCTGCTGCCTCTGGTCATCATGATCACCTGCTACACCAGGATCTTCTGTGAGATCTCCAAACGACTGAAAAAGGACAACTTGCCCTCCAATGAAGTGCATTTGCGGTGTTCGAAGAATAACATCCCCAGAGCCCGGATGAGAACTCTAAAAATGAGTATTGTGATTGTCTCGTCTTTCATTATCTGCTGGACTCCATACTACCTGCTGGGCCTCTGGTACTGGTTCTTCCCTGAGGACCTTGAGGGGAAGGTCTCCCACTCACTGACCCACATCCTGTTCATCTTTGGGCTCGTCAACGCCTGCCTGGACCCAGTCATCTACGGCTTGTTCACCATTCACTTCCGTAAGGGGCTCCGGAGGTTTTACTGCAATGCCACCACGAAGTCCAACCTGGACAACATCACGGTTTTAACTGCATCTTTTACTTGTGCTACCAACTCTTTGCCACTGAAAAGAGAGGTGAGCCCTGCCAGCCAGGAGAGGTTCATGTTGAGCAGTGATGATAACCACAGCAAAGCAGAGTTGACGTCAACAAGAAGCAGCTTTTTAACAGCAGACAACGATGCAGATAGAGATCCGAAGCGGTCCAGCCCTGAGAGCATCATATGAGGAGAGTAGAGGGTGGAGAATCTGTTTTATTTAGTTCGATTTATTCAGTGTCTGACGGTCTGTGTGTCATTTTGACTTTTGACACAAATTGTAACATGCTTCTGTATAAAACACAAAGGCCAAAAATAATTTCCTTGAAGAGGGGAAGCTTCATAAAATAAGTACACACATGACAATACACTAACATCAAGCTTCTGTAATAAAGAAATGTCTATGCTCTGTACATTGTAACTTGTGGTCATCttgaaataaatgtattcacTGGGGTTTAAAGTA

Function

GO: NA

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42221 lncRNA downstream 60684 33566426 ~ 33569379 (-) False serf2
TU42127 lncRNA downstream 294658 33333954 ~ 33335405 (-) True G31707
TU42126 lncRNA downstream 296125 33333098 ~ 33333938 (-) True G31706
TU42125 lncRNA downstream 297044 33329613 ~ 33333019 (-) True G31705
TU42124 lncRNA downstream 364388 33265318 ~ 33265675 (-) True G31704
TU42292 lncRNA upstream 78809 33714300 ~ 33715276 (-) True G31820
TU42296 lncRNA upstream 81228 33716719 ~ 33718580 (-) True G31822
TU42348 lncRNA upstream 220407 33855898 ~ 33856166 (-) True G31862
TU42371 lncRNA upstream 544414 34179905 ~ 34180494 (-) True G31881
TU42400 lncRNA upstream 650797 34286288 ~ 34287080 (-) True G31906
XM_039794933.1 mRNA downstream 60688 33566371 ~ 33569375 (-) True serf2
XM_039795198.1 mRNA downstream 158728 33436811 ~ 33471335 (-) False znf710b
XM_039795199.1 mRNA downstream 158728 33436811 ~ 33471335 (-) False znf710b
XM_039795196.1 mRNA downstream 181011 33436811 ~ 33449052 (-) False znf710b
XM_039795197.1 mRNA downstream 181016 33436811 ~ 33449047 (-) True znf710b
XM_039796200.1 mRNA upstream 88370 33723861 ~ 33728257 (-) True bcl2l10
XM_039794315.1 mRNA upstream 95643 33731134 ~ 33744672 (-) True gnb5b
XM_039794321.1 mRNA upstream 109652 33745143 ~ 33806294 (-) True myo5aa
XM_039794325.1 mRNA upstream 109652 33745143 ~ 33799613 (-) False myo5aa
XM_039794319.1 mRNA upstream 109652 33745143 ~ 33799612 (-) False myo5aa
XR_005638776.1 other downstream 181002 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 281973 33342247 ~ 33348090 (-) True wdr76
TU41994 other downstream 735658 32891499 ~ 32894405 (-) True G31602
TU41279 other downstream 3097947 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 4168827 29402754 ~ 29461236 (-) False elp4
TU42326 other upstream 171445 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 171445 33806936 ~ 33816370 (-) False LOC120555494
TU42453 other upstream 855169 34490660 ~ 34599541 (-) True G31955
TU43972 other upstream 7013185 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 8122300 41757791 ~ 41764896 (-) True sirt3

Expression Profile