RNA id: XM_039795487.1


Basic Information

Item Value
RNA id XM_039795487.1
length 8641
RNA type mRNA
GC content 0.48
exon number 29
gene id si:ch211-220f16.2
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 43338654 ~ 43390335 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTTGACAAACGTGACCAATGCATATCTCTGTCCCATCGTCGCCAAGtggaataaaatgtaattttacgAGATTTTGTCGATGTTGTGAGGTTTCGCGTTGATTCTTCATGAAGCTGTGAATCCGgtctAAACTGAAACCATGCTGAAATGGCTTTCCGGTGAGGAGGGAGAGCCTGGCTCTGTACCCACCGTCTCCCCTGTCCCTCCCCAGGGTCCAGGCTCTccccgtgctgctgctgctgctggtggtggagAAGTTACTGTAGAAGAAATGTCGGAGCGGCTCACCCAAACCGAGCTGCTTGTCACTCAGCTGAAGGAGATGATCCGGGAGAAAGATGCAGCACTTCGCTCCAAAGATGACCAACTTAAGGTGGAGAAGGAGACATGCGAGTCCAAACTGTCGAAGCTGCGTCTTCAGAACAAGGCCAAGGTGACCTCTCTCAACTCACagctggaggagctgaagaaacAACAGGGAGGTCAGGGCACGCCAACACACAGCAAAAAGGGGTCttcagaaggaggaggagagcatGCCAGTCGGGGCAAGATTGTCTTGCTAAAGAAAAAGGTGGAGGAACTAGAACAGCAGCTTGCACAAAGACAGGAGGAGCTGGAAAACAAGAGGAAGGAGGTCGAGTTACAGCGGCAGCGGGGCGAGGAAATGGACACCATGCtgacagagagggacaggaagCTGGCGGAAAAAGAAGCGTATATTGTTCATCTGCAAACAGCACTGGCAGGAGATCAGCCCATCCCACCTGCACCACAACAAAAGGTGGCAGAGGACAGTGGAGCAATGCAGGAGCTGCAGCTGCTGGTGCAAAGCCTGACCAAGAAGGTGGGAGATGCGGAGGAGCGCTACAGTTTGCTGCAGGAGCAGACAGACAGCCTCAAAGAGCTGGTGGCCACAGAGAAGGAGCAGTACATTCAAAAGGAGACCATGTACAAACAGAACatccAGACATTCAAAGACATCATTATTCAGAAAGATAACCAGCTGCTGGAGATTAACCAGATGCACGAACAGGAGCTCTTCAAGCTAGCAGCGAAGTCTGACGCCAGCGCAGACTTAGAGCAGCTTTTGAAGGCTCTAAAACAGAAGCTTCATGAGAAGGAGGAGGTGCTGCTGGGTAAAACGCAGGTCATCGATGTTCTCCAGGGAGAGGTGGATGGCAGGGATCAACAGATAAAGGAGCTTGCAGAGCGGCTGCGTCGACTACAAGTAGAACGAGAGAGCCTGGAATCCAAGATGGAGGCAGAGAAGCATGTGATGCGAGCGCAACTCCGCGACCTGATGGAAAAGCAGCAGGCGGAGGTGCAGCGAATGGCTGAGCAGCATCAGGCACAGATGGCCCAAACGCAGCAGGATCTCCTGGGGCAGCTGCAGGAGCTGAGGAGGGCCTCGGTAGCGGCACCATCTCCCAGTCAGGAGGCCACAGGAAGTGGAAGCATGCCCACAGATTCAGCCTCCATCCAGAGGATCACTGAGCTGGAAGcccaaacaaagcaaaaaacgGACGAAGCGAGCAGATCAGAGGCCAAGTTCCTGAAAATGAAAGCCTGGTCTAAATCTCGGATCAGACAGTTGGAAGAGGAGTTGAAGAAAAGCCATGCTGGAGGTGCCCCCCCAGACCTGACTGCCCTGCGGAGTCGTATCACAgcactggaggaggagagagaggaaaacctCTGGAAAGTGGAACAATATGAGGAGCTCAAAGCAAAGAACGAAATGCTGGAGGCTAAGCTGGTGGTATATGAGGAGCAACAGAGGACACTACAAGCAGACCTGGAGCAGTTCACCAAGAGGGCCACCTCTCAGGCAAGTGAGTCAGGCAGTGCAGATGACACTCAGAGCCAGGTGCTGGAGTGGCAGGAGATGGTAGCTGAGGCAGTCAGCGCCAGGGACCGGGCCAAGGAGGAGAAGACTGTCATGGCCCTCCGCATTAGCCACatggaggaggaaagagaggCACTGGCCACTCGGCAGCAGGAGTTGGAGGAGGAGCTGAGTCAAGCTCGGGGGCTCGGCCAACACAGGGCCAAGAAGCTGGCATCTCCCGCCCAACGAAGCCTGCAGGAGGACTTTGAATTTGATGGGCAGGCCCCATTCCAGGACCCGCGGAGCAGCTCTCAGAGCACGAACCCGATGGAGGGAGAGAACATGGGAGGTTGGTGGCCCGAGCACAGTACTCCTGATACAGATGGTTTGCGGTCTGTCGTGGAGGAGCTGGAGCTGGAAAGGAACCAACTGCAGGAGCAGATCCTGAGCCTGGAGGAGCGCTGTCAGGATCTGGAGGATCGACAGCAGCTGCAGTCCCGCATAGAGACGTTACAGAATGAGTCCGAGAGATTACAGAGCCAGCTCGCCAGCGTCCGAAGTCAACAGAGCAGAGACGCAGAGAAGCATCAGCTACTGGTTAGCAGTCTCAACGAACAGCTCAAAGGactGAGTAACACACAGGAGTGCCTGGAAAGCTCACTCATCGAGAAGGAGAATACGCTGGCCAAGACGTCCGAGAAGCTCGAGCTCATCAACGGCCTCCGAGAATCTTTGAGTGAAAAAGAAATTCAGTACAAAGAGGTGTCTGACAAGCTCCTTCAGGCTGAGAACACTCTTGAGAATGTTTCCAAGAAATGCAGCAACTCGGAGAAACAGTGCTCTGAGCAGAAAACGGAAATTGTCGACCTCACGCAGAAGCTGAGTTTGCTGAAGGAGAAgACACAAAAGCAGGAAGTCAACATAGAAACGTTACAAACTGAGCTTGATCAGACAAACGAGGAGCTGGACAAACTAAACTCCGCACACTTGGAAGAACGAGCCCAACTCATTCATGACCTGCAAGGCTGCGAGCGGGAAATCGATAGGCTTAAAGACATCCTGCTGGAGAAGGACGAGGAGATATCGACCCTCTCCGGTAACATGGCCGAGTACGCAGAGCAGGTCACAGTGCTGAAGCAGGAGATCCGACTCAAAGACGAGAACCTGGTCCGTGTAGAAACCGCTCTGAGTAAGGCAGAGCTGGAGTCCAGGATTATCAGAGACACGCAGAATTCAGACCAGCAAGCCTTCGTCACAGAGCTGGTCCAGAAACTCAAGGATACTGAGATAGAGTTGGTCAAAAccaaagaggaaagagagtcTAAGGGGGCTGAGGTGGAACATATGATAAAGCAGGCAGAAGAGGACAAGAAAACTATTCAGTGCCTTCGGGGGGAGACCCAGAAACAGATTGTGAGCCATCAAAATCATCTTTCTGAATGTGAAACGCACATCACTTCACTAAAGGAACAGCTGGCTTTATCCACCCAAAAGCTGCAGGAGTCAGAAAGACTCCTTTTGCAGCTCAAGGACAAAAATACCAGCAGTGAGCAACTGCAACAGCAGCTTAATGATAAAGAACAGACCTATGAAAAAGAACTCAAATCTTTCAAGGAGGAACAGAACAAACTTTTGGCACAGGTGGAAAGATACAATAATGAAATGCAGACATTGTCCAAACAATTAAAGGATCAAGTACAAAGTGAAGAGCACATTAAAAAGGAGGTAAAGGAGAAACTGAAAACCATAGCATCACTGGAAAACCAACTGAAGACAACCGATAAACAGGCCGAGGACGAGAGGCAGAAATTCAACACTGAATTGCAAAACCGGGATTCAGAAAATGAGAAATTGAGCAATGAGCTTCAAAGCAAATCTGAGAATATCTCCAAACTCAAGAATCTCTTAAAAAGCATGAAGACGGAGAAAAAGCAGCTGCAAGAAAAACTTAAAGGGCTGACAGAGGATCTTGAGTTGCAGAAGCAGAATGTAAATCAGTTTAGTGAAAAGATTGCATCGGCTCTTGAACTCAACCAGAGTCTTGAGAATCAAGTAGATTGCCTTacgaaagagaaagagagactcgAACTGGAAGTAACTGAAAGCGTGAAAACTATTTCCGAAGTTACACTTGAAAAGGATTCCCTGCAAGCCAAAGTATCAATACTGGAAACGCAGCAATCTCAAAATAACACAGTAATTGAAGGGCTACAAAAAGATAAAGAGGATTTGACTCTTCGAACTAGTGAGTTAAATCGAGTTCTCGAGCAAAGCACACACTCAAACTCAGAGATTCTGctagcaaaaacaaatgaatgtaGTAATCTCAGCCAGTCTctcagggagagggaggagagggtaACCCAACTGCAGGAGCAAGTGCAAAGCTTGACTTCCAAGGTAGACCAGCTCCAGCTTGACATGGCAGAAAAAGAGCAGACAATCAGTGATCATCGAGCACAGATAGAGGCCCAAAAAAACCAGCAAGCGCAACTTCAGGAAACACTGTCTCTGCTGCAAGAACAGGAGCACAGTCTGAAGTCTGGGTTAATGGAGAAGGATACAATATTGAAAGAGAAGCAGGAAGAGTATCACAGTTTGCAGAATGAAATCACACACCAGAAAGATATTGTATCCAAGCTACAAGCAGAAGCCGAATCACTTCATGGAGAACAATCAGGACTTCGCCGGCAAattgaagagagagaagaaatgttgaaaaatgtgacacagcagtgtcaaaaacacaaagaCGAAGTCAATGAAACAAACAACACTGTTAAAGCTCTGAGTGACCAAATTCGTGTAATGGAAGAAAATGCCAGACAGCTTGAGTCTGAAGCAGAGCTGAGGCAAACGGAGACGGCTAGCTTAAACATCCACATCCAGGCAGTGACTGAGGAAAACCTCCAACTTCGCGCTGCCTGTGAAGCCAGAGACAAGGAGCTTGCTCGGCAAACACAGACCCTGTCCGAGCTTCATGGACAGCTTAAAGCAACTCTTGAACAGAACTCCGTATTAAGTGTGAAGATAAGCAGCCTAACAGAAAACAATCAGAGACTACAAGAGGAGTTAGCACAGAACATCAAATCAGTTTCTGAACTAACCGCAGAAAGGAATTCAATTCGAGAACAAAACTCTAAGATCCAAATTCAAACCTCAGAGAATCAGAAAATAATTGACGGCCTGctgaaggaaaaggaaaagctCGCTGTTGCAGAAGATGAATTAAAAAAGATCCTCAAGGAAAGTGAACAGTCAAACTCTGCAGGTTTGCTCGAGAAAACAAGTGAATGTGCTCATCTGTCAAAAATGTTGCGGGAGAGAGAAGAGCAAGTTCAGCATCTACAAGAGCAACTTGATGGCTTAAAAAAGCACGTCAGTCAACAAATTTCACAGTTGGAAGCTCGGCAGGACCAGCTGCTGCAACTTCAGGATACTATATCTATGCTTCAGGAACAAGGATCTGTTCTCAAGTCAGGGCTAATGGAGAAAGACGCAATGCTTCAGCAGAAAGCAGAGGAGTGTAGCGTTATGCAGAATGAAGTCGTGCAGCAGAAAGCCCTCACATCACAGATGAAGGGTGAGGTAGAGTCACTCAGGCAAGAGTGCTCAGAGGCGAAACAGCACATAGAGCAAATAGAACAGACATTGAGAGAAGTAAGAAATGAGTGTAAAAACCACAAAAACGAGCTGAATAAACGAAACGAATCGGTGATCTCGCTCAGCAGCCAGATTGGTGCCATGAACGAGAACGCTGCACAGGCCGAGGTTGAAGTTGCCAACCTAAAGACCACCGTGCAGAAACTCACTGCAGAACTGACACAGAAGGAGGACCAGAGGAAAGCTGAAATCGTTGATTTTAACGATAGCATTGAAGCACTGAAGGAGGAGAACTCAAGATTAAAGTCTGAATTTAAGAAAACCGTGACAGATTTGTCCAAAGCACAGGAAGAGGTTACCCATCTGAAAACAGCAGTCTGTGATGGGGACAACAAACTCAAAACTGCAGGCTCAGAAAGGGAGCGGCTTAATTTGATCATGCAAGGTAAAGATGACTCCCTGAAACAGCAGGAGAATTTGATCCAGCAACTCAACAGTAGGATTACTGAGCAGGAGGAGCAGCTGAAACAGAAAGCAGATGACAATGTCAGTTTAAGTGCAAAGGTTTCAGAGCTTGAAGATTCTGTTTGTAACCTCAGAGAACAGGTTGACAGTCTTTCTTCAGAGTCACATTTACTgaaaaatactttggagaaaaAGGAACAGTCGAGTCTTGAATATCAAAGCCATTTTTCAGGTACGGTTGAGAATCTTAATTCAAATCTACATGCCAAAGAGGTAGAGTGTGAGAGCTTGAAAGAAAAGACTTCACACCTTGAAGAGTCAGTCACAAAGCTCAAAAGCACCCTCCAAGAACAGATATCTGAGACGGAAAATCTGAAGAAGGCCTTGGAGGAAAAACAGGCAGCTCTTTTGGACCAATCAAAGTCTCTTCAGGATATTCAGAGAAAAGCAGATGAGGCTTTGCTCTTTAAAActcagtttatggaaagcacagaGTTGGTGTCACAGCTACAGAGTCAAATTCAGCTACTGTCCACTGGGTctgaaaactttaaaatgtcagcAGAGGAAACACAAAGTGCCTTTAACAACCTACAAGAGAAATATGCAGCTAACTTAGAAATGCTGCAAGATGTGAGAACGCAACTGTCCCAAAGGACTGACGAGGTGTCCAAACTTCAGAAGTTATTGGATGACACCAGTAACGAACATCAGACGGCAAATTCCACTATAGAAACACTGAGAAATGAGTTATCGGCAATCCATCACAAACTCGAGAAGACTGAAGACCTGAACTCCAGTCTTTTGAAGGAAAAGGACGAAGCTTTTGCTTCTCATCAAGCAAGCGTGTCGCTGCTGACTGTTGAAATAGAAAGACTCAAATCGCAACATCTTCAAGTTGTGGCACAAATGAATGCGCTGACCGAAAACCTTGAGCAGAGGGAAATGGCTCTCCATGCAATTAACAGTCAGTACACTTCCCAGGCCAAACGCGCATCCCAGCTGGTTTCAGAAATGCAGAAACTAGAGCAGCAAAATAAGAGATTAAATGAGGAGATTAGTTTGTCAAAGGAAGAGAACCAGAAGCTTCTTACAGCTGCGAGTAATGAGAATGTACGTTTGCAGGAGGAAGTTAGAAAACATCTCACAGAGAGGGAAGAGCTGGAAAGGCGACATCATCAAATATGGACATCGCAGGGGGAGCTGCAGGTTCAAATGGAGCAGCAGTCCAGCAGCATGAACGCAGTAATGGAGAAAACGATGTCCGAGAAGGAGAGCCTTCAAGCAAAGGAAGCGAGGCAGAAGATGGATGAACTACAGCAAACCGTAAAGAAGATGCAAACTAACAGACTGCCACCTGGAAAAGAAATCAGCAGCTACCAGGAAGAAACCGCAGATCtaagATCTGACACCGAGAGGAAGGACACACTGCCAGTCAAGGAAACCGTTGTTTTGGCAGGTCAGAGTGGAATGGACGAGGTGGTGAGTCGGTTGGAGGCAGAGAGGATCCAGCTTCACGGAGACCTGCAGCGCTGCATGTATGAGATCCAACAACGAGACCAGTACCTCCAGCAACTCAACCTCAAGCTGCAGCAGGAAGTGGAGGAGAAAGGTGCTGTTGCAGCTCAGCTGAGGGCCATTTCCCAAACCCTGAGGGACACCCAGAATCGCTGCCACTGGCTGGAAACCCAAGTCCAAGGCCAGTCTCAGGGGTCACTGTATGCTGAGGTTGCACCTGGAGCCCCCCAGGAGAGGAGCATCAACTCCATGACTGCTGGAACCGCTGAAGCCAGTCAGCTCCAAGAAAGgctgCTTGAGTTGGAGCAGAGTCTGACAGACGAGAGAGCGAGGAGAGAGACGGCTGAGGAGGCTCTGCGTCTTGCTGAGGACAGAGCAAAgagTGTTGAATCCAGCCTGTCCAGAGACAGTCAGAGGGACTTCAGTATCGAGATGGAAGCAGAAGACGAGTGGGAAACTCTGAGTCTCAACCCAAACCAGCCTCTCATAGCACGAAAGGTGAAAGGCAGCATGGTGGCGTGCCGACGCTGGCTCAGGGGGAGGAGCCTCTACTTCTCCAGGCTGTTGACGAGCCGCGCACGCTCTCGATATTTCTTTCTGGCCTACCTGCTCACAATACACGTGCTCGTCCTCATGTGCCTCACTGGGGCCCTGTAGCCAGCTCGCACTGGGAAATGGGTTTAAGGTTGAAACTGAAAGCTgaagtaagttttttttttttttttttaaagctaattcagcatttttattttctctctgtgcTGAAAAGTGAAACACTAAAAGCGGCCCACATACAGCAGTTTGGAGATGCTCTCCATACTCCTGTCAGGCCACACCTTTCCTTCCTAGGAAAGTAAATAATATGTTGACGTTAAAGTTTCCTGCTCAAACGATGACATAACATGTTCAAAGATTTCAGATGAAGTCTTCACAACATGTAATGCCATTTTTATTCATGTGGTTTGCAAGACTGAACACAGTGAGTGTGTCTTAAATTAGATTGTTTCCTTTAAATATATGTTAAATCAAGCCTCAGAGTATGATTCTCTCCTCCCTCGCTGctgttttgggggaggggggttacTTAATTATTTGGCCGTGTTGCCTACAGTTtgttgtagagctgcaaagatgagacgattagttgtcaactattaaattaatcgctgactattttgataatcgattaatcggtttgagtcctTTTttatgtcagcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44994 lncRNA downstream 867 43336810 ~ 43337787 (-) True G33875
TU44993 lncRNA downstream 1144 43336810 ~ 43337510 (-) False G33875
TU44968 lncRNA downstream 2619 43335819 ~ 43336035 (-) True G33857
TU44965 lncRNA downstream 9562 43328552 ~ 43329092 (-) True G33854
TU44964 lncRNA downstream 20476 43317845 ~ 43318178 (-) True G33853
TU45005 lncRNA upstream 20309 43410644 ~ 43411414 (-) True G33885
TU45006 lncRNA upstream 22300 43412635 ~ 43413282 (-) True G33886
TU45040 lncRNA upstream 99386 43489721 ~ 43489925 (-) True G33918
TU45117 lncRNA upstream 128618 43518953 ~ 43519895 (-) False G33960
TU45118 lncRNA upstream 128618 43518953 ~ 43519895 (-) True G33960
XM_039796163.1 mRNA downstream 33467 43017721 ~ 43305187 (-) True LOC120556519
XM_039794520.1 mRNA downstream 615780 42704200 ~ 42722874 (-) True arfgap2
XM_039794521.1 mRNA downstream 615783 42704200 ~ 42722871 (-) False arfgap2
XM_039794517.1 mRNA downstream 650749 42664205 ~ 42687905 (-) False cars1
XM_039794116.1 mRNA upstream 6090 43396425 ~ 43400445 (-) False LOC120555429
XM_039794115.1 mRNA upstream 6090 43396425 ~ 43400445 (-) True LOC120555429
XM_039794198.1 mRNA upstream 13203 43403538 ~ 43407721 (-) True LOC120555495
XM_039794090.1 mRNA upstream 26988 43417323 ~ 43429155 (-) False LOC120555411
XM_039794089.1 mRNA upstream 26988 43417323 ~ 43429153 (-) True LOC120555411
TU44958 other downstream 123667 43214634 ~ 43214987 (-) True G33847
TU44891 other downstream 347884 42985223 ~ 42990770 (-) True G33796
TU44774 other downstream 936518 42399291 ~ 42402136 (-) True G33711
TU44387 other downstream 1573758 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 2676033 40648676 ~ 40662621 (-) True G33122
TU45036 other upstream 62377 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 137246 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 384275 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_148 other upstream 546641 43936976 ~ 43937048 (-) True trnav-uac
TU45304 other upstream 695091 44085426 ~ 44089423 (-) True G34078

Expression Profile