RNA id: XM_039796163.1


Basic Information

Item Value
RNA id XM_039796163.1
length 9761
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC120556519
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 43017721 ~ 43305187 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCGCTCGGAGCCGCGCTGAGTGTCTGTCGCCTCGGGTTGAATTTCAGCGCGGCAGCGCTCGGGTTTCTCTCCGGGAGATCAGGTTTAAAACGCACCGGctgcctctcttctcctccctccctcccttccttctttGGAGCTCTCCTGCTGCCCACCACTGCCCTTTTTCTTCCGTCCACACATATTCACACTTTGActggaagttttttttattttttttttattttttcccccgGCAGAGCTGCTCCACTGACGGCGGTGCGCGCTCGGAGAGCCGGGAGTCATGAAGCGACATTAGGAACAAATAACCgcgggaaagaaaaaaaaagagagaaagaggacaacAGGACGAAGGGAATAAAACAGTCGGAGTGAAACAGGAACCAGGACGACGTCCAAGGGAGCCTGGGTGCAACAGTGGAACCTCCTCTTTGAGAGAGCTTTTCTCCTCTGGATGGTATGGCTGAAATGcTGAATCCGCCGGGCCTGCTGACTATGCCCCGGAGCCCCACCTCCAGTGAGGATGAGATGGCCCAGAGCTTTTCTGACTACTCAGACGACTGTGCCTCCGACAGCTCCCACGAAGAGACCATTTACGAGACCATAAGGGCCACCGCCGAGCCATCGCGGAACCACATGGACGACATTCACATCAACTCGCTGGTCATCCGCATCGTCATCCCCGACCTGCAGCAGACGAAATGCATGCGGTTCAACCCGAATGCGACGGTCTGGGTTGCAAAGCAGCGGATCCTGTGTACACTTAATCAGAGCCTGAAAGACGTGCTCAACTATGGGCTTTTCCAGCCTGCTAGCAATGGGAGGGACGGCAAGTTCCTGGATGAAGAGCGCTTCTTTCGAGAGTACCCCCAGCCAATCAGCAAGGGCGTCCCGTCTTTGGAGGCCAATCTGAGGAAGTTCATGGACCTCATCCAGCATAATCAGGTGGACAAAGTGTCTAAGATGTTGGAGAGAGGCTTCGACCCCAACTACCATGACAGTGAGACCGGTGAGAGTCCTCTGACATTTGCTGCTCACCTGGACAACGTGGTGGAGTTGATCAAGGTGCTGAAGACGGGCGGAGCTCACCTGGACTTCAGAGCCAAAGACGGCACGACTTCCCTCCACAAAGCCGCGCGCTCCAGGAACCTCGGTTCACTCACGaccctgcTGGAGTTGGGAGCTTCTCCGGACTACAAGGACAGCCGTGGTCTGACTCCTCTGTATCACAGCGTGATGGTGGGGGGGGACCCGGGCTGCTGCGAGCTCCTGCTCAACCACCACGCCTCCGTCTGCTGCCAGGACGAGAACGGCTGGCATGAAGTTcaccaggcTTGCCGTCACGGCCACGTGCAGCACCTGGAGCATCTGCTGTTCTATGGCGCAGACATGAGCGCCCAGAATGCCTCGGGAAACGCTGCTCTCCACATCTGTGCCCTATACAACCAGgatAACTGTGCCAGAGTGCTGCTTGTTCGTGGAGCCGACAAAGAAGTGAAGAACTACAACAGCCAGAGTCCATTTCAGGTTGCCATTATTGCTGGGAACTTTGAGCTCGCTGAACTCATCAAGAACCACAAAGAGACGGATATAGTGCCTTTCCGCGAGGCTCCAGCCTACTCCAAGCGCCGCCGGGGCCCGTCTTCTGGCAGCGGAAACGAGCCGTCCCCCTCCTCCCTATCAGCGCCGCGGGTCCTGCTGCGCTCCAACAGCGACAACAACCTAACAGTCAGTCagtaccagcagcagcagcagcacgggtCTCCTGGCAACTGGGCCCCCCATCTGCAGCAACACGCCCAGCCCCACCCACACAGGGCCCCCCAGCAGGGTCTCTCGCAGCCTGGCTCCTCAGCATTACACCGCAGCCTGTCACCCCAGCTGCTCCAGCAGATGCCCAGCGGCAGCCCAAATGGCAACGTGGTGGTCCGGACCATGGGGAGGGGGGCACGGAGCCGCTCACCCTCCCTCAGCCGGCTTGGGGAGGAGGCCCGCCGAGCTCCGCCTGCACAGCGCCAGCCCAGCCCCAGCAGTCACGGCGAGGCCGTAGGCACCAGGAGGAAGCTGTACAGCGCCGTTCCTGGCAGACATTTCGTGGTGGTTCGTCCTTACATCACCCAGGCCGAGGGAGAGATCAACCTGTACAAGAGCgacagggtcaaagTTCTGAGCATCGGGGAGGGGGGTTTCTGGGAGGGCAGCGCCCGCGGCCAGGTGGGCTGGTTTCCAGCCGACTGTGTGGAGGAGATCCCGGCCAAGGCCGCCGACGAGAGGAGCTATTCCCGAGCAGACCGCGCTGACAGACGGAAGCTCTTCAGACACTACACGGTGGGCTCCTACGACAGCTTCGACGCCTCGAGTGACTGCGTGGTGGACGAGAAGACGGTGGTGCTCCAGAAAAAGGAGAATGAGGGATTTGGCTTCGTCCTGCGAGGGGCAAAAGGTAGGAACAATTTACTGACTTTTTTCTCAGCGGAGACTCAGGAAACGGAGTCGGCAGCGTGGTTCGCTGGAGAGAAGCGGACATCAGGACGGAGTGAAAATGACGAGGACCGCGCGCGGCCTGGTGACGGGACTCTGAGGgtGAACCAGGAGAATGTGGTGAAGGTGGGCCACAGACAGGTGGTCAACATGATCCGCCAGGGAGGCAACCGGCTCCTGATCAAGGTGGTGACAGTGAGCCGGAATCTGGACCCTGACGACACGGCACGCAAAAAAGcCCCTCCGCCTCCAAAGAGAGCCCCGACCACCGCCCTGTCCATGCGCTCCAAGTCCATGACCTCAGAACTGGAGGAACTTGTGGATAAAGCCACTCTAAGGAAAAAGAAAGGTGACAAGGTTGAAGAGATGACGCACGCCCAGAAGACCTCGCCTGTTGATACAAAGATTGCCACAATCAAGCCACGCCCATCCAGTCGCTGTTTGGTTACAGCAGCTGATATGAATTCCATGTATCATGACCGCCAGGGAGTAGCAGTGGTGCCACCCACTGTGCCTGGGGCCTTTCTGGGGATACCTGAAAAGAGCACTTTGAAAAAGCAAAAGTCCATAGGTACATCGGAGGATGAGAAACAGGGATTCCTCACACCTCCCCTACTCAAGTTCTCCCGCAGCCTCTCTATGCCCGACACCTCAGAAGacatccctcctcctccagccATCTCACCTCCTTCGCCACCGGACTACAACTCAGCTGCTGCCCCAACGCCCAAGAGCTACGGCACCACTCGACCCAGCTTCACCCAGAACTCACCCAATGCAGTGAAGACGATTAGCCGGACCACCGACGTTGGTACGTTAAGGCGTGGCTATTTCCGCCAGAGCTCCGAGCACTTTGAGACCACACGCATTCGAGGGCGTACACCTGTGCCGGAGAACCCTTACTCCGAGGTGGGCAATAAGACACTGTATGTGCCAGCCAAACCAGCTCGAAGGAAGGGCATGCTAGTAAAGCAGCCCAACGTTGAGGACAGTCCCGAGAAAACGTGTCGTATGCCAGCTAACCCCTCGGGCGCGGTTTCCATGCCTACTACGCCAGTAGAACGAACTTGCTCTTCCATTCCCATCCCCACTATCATCGTAAAGGAGCCCTCCACCAGCAGCAGTGGAAAGAGCAGCCAGGGTAGCAGTATGGAGATCGAGCCCACCACCCCTGAACACCCACCTCTAACGCCCACTGTTGGTGGTTTGCGTCCTGAAGACCCTATGTCTCTAAGCAACCCCTTTGCGGCAGCTATTGCCGGAGCAGTACGGGACCGGGAAAAGAGGCTAGAGGCAAAAAAGCATTCAATTGCCTTCCAGTCAGTAGACATGGGGGATGATGACTTCGGTGGTCCCACACCAACACCTCGCCTTCGCCATTCAAAGTCTATCGATGAAGGCATGTTTAGTAGCGACGAGCGGCTTCGAAGGATATTGGGTCCTCCTCTCGCATCACAGCTTGGGCCCCCTGTTGGGGGCGGTAGTGGCAACATGACAGATTTCAACACTCCTGAGCCTACAGTGGTACGGGAACCTCTAAACACTAGAACAGGCCAGTGTCCCAACCTGGACAGTCCTGTTAGTCTCCCAGCCACTCCTCCTAAGAGCCACTACAGGGCCAATGGGACCTACCTCCATCCTGTCACCGGCAAGCCCTTGGATCCTAATTCTCCACTTGCTCTGGCCCTGGCAGCTCGTGACCGGGCGATGAAGGAGCAACAAAACCATCCTCAGAATCAGGCACCAAATCCTCCTCAGGTTCAGCAAACGCCCAAGCACGAAGCCCAGTCCCTCCCAATTCAGCCAAGCCACAAACCAGACCTCAACCAACCGCTGTTTATTGACACCAAACTACGCTCCGGGATCGAGACAAGTTTCGCTGCAATCTCCTCAGCAACCATGGGCCGGCCTGGCCGAGGCGGTCTGCGGAGGCAGGCCACAGAGCAGAAGTATGAGTCTGATGGGGCACGGGAAGAACGGCAGCATCAGGCAGCTGAGGAGAGGAAAAGTGCGCCAGCCGATGTGGCAGACACATCACCGCCCAAGTCAGCCGGGCTGTTGATGGTCCACACCAGCAACGAAGCAAGCAACAAGGTGAACAACCAAGAGGTGGAGGGGCAGGACAGCAACAGGCCTTCTGAGCTGAAGGACCCCAACCAACCCGATCCTATCAACGCTACAACACTGTCCGTCAATCCTCAGCCACCCTCATCACGGAGGAGGAGCATTCCCTTAGGCGAGTCCATGGATGAACCCGTAAAGCTGCCCTTCCgcatcccccctccccctctggcCTCAGTTGACATCGATGAGGACTTTGAGTTCTCGGAGCCCCTTCCCCCGCCGCTAGAGTTTGCCAACAGCATTGACATTCCTGATGACCAGGCTAGTGCCATTGCAGAGATGCTTCATCAACAGAGACGGAATGGGGGACACCCTCTACCCCCATACCATGCTCACGCCCCACCGCCTGTCACTGATCAACACAAACGGGTGGCAAACAGCATGCCCCCCTCGTATCCTCCCCCTCCACCTGACTCAGAGTCAGGGGTGGGTGACTCGGGCATCGAGGAGGTAGACAGCCGCAGTAGCGGGGATCCTCAGCACATGGAGACCACCAGCACCGTTTCCAGCATCTCCACCCTGTCATCGGAGGGAGGCTTCTGCGACAGCGCTCTGGAGAGCCTTTATGCCACCGCGGACGGGCATGCCTTCCTGGTGGATCGGCCCCCTGTGCCACCCAAACCCAAGGGCAAGTCCGTCATCAACAGAACATCACTTTATCATGATACTCTCATTGAAGAGCCCCCGGAGTCCTATGGGTCGCCTCCTCaggcccctccccctcccccttcaTCCTCAGAACCTCCTAGGACTCCAACTCAAAGGACATCCAAGCTGTGGGGCGATCAGCCCCCTGAGCTGCGCAGCCCCCCATCCACACCAGACTCCAAGAACACAGTTATCACCGAGCTGAGCTCCATTCTGCAGCACATGAATCGCgacaggccagccaagccaggaGAAAGCCTCGACTCCCCCACGGGGACCAGGGGGGGCTTCGGAACAAGGCTTCCCGCAGACGACTCAGGGATGCGTAACAACGCTGCGGCCGCCGCCCTCGCCTCCACCCCTCCCAGCAGCCTCCCCTCCCAGACGCACCCCTGCAGCCCGCCAGACTCCGGCTCCTCCCTCACCCCCTGCTCCTCGCTGCCACCCTCCGTGTCGCCCACCCTCACCGACGTCTTCGGCCTGCCCACCCCGCCCATGGGCAGCGGCGGCGCCTACAGCCTGAGCTCGTCGTGCGGCGGCAGCGGGAGCTCGCGCTCGCCGTCGCCGCTCACCCTGATGCAGGCGGTGGCGGCCTCGGGCAAGCCGTTCGCCTCCAAGCCCATGGAGCTGTGGAGCAAGCACGACGTGGCCGACTGGCTGGAGAGCCTGAACCTGGGCGAGCACCGGGACGCCTTCCTGGACAACGAGATCGAGGGCGCCCACCTGCCCTCGCTGCAGAAAGAGGACCTGATAGACCTGGGCGTGACCAGGGTGGGCCACCGCATGAACATCGAGCGGGCCCTCAAGCTGCTGCAGGACAGATAAGAGCCCCGAGGAGACGGGGGGGCGACGCGCGGAGTCCGGGGGGGCCGAGGAAAAAGGGAGAGGGGAGGTGTTTCCCGCTCACTTTTTACCGATCTCTTCATCAGACATAATCTCAAGTCGTTGAACTGGGtagacgtttcttttttttttgtccaagcTGATGCTGCctcttgctgtttttttgtcctCTCTCATCCTCCGCCGCCCTCATCTCAGCGCTCCGGTCTTGTCCGCCCCCCTCTTCAATTTCTTCCCACCGCCTCGAGCATCAGGGGATCAGGGGATCACGGGACGTCGGGCGGGAACcgcagggggagagagagaagagaatagCTGCTATGTCACATCAAGGAGAGCAAACAGCAGAGGACGCCAGTACGAAGGACTGACCAGAAAacgaaacagaaagaaaaactcTGGAATAGCGTCTGGAAGTTTATTTCACATAAAAGACTCCTGCTCACCCAACTGCTTTGGAATACTAAAAGACTTTTTCCATACACCCCGGTGTGGGTGCATGAAAAACCAGCTGAGCTGGTCGTTGCTCCTTTTCTATCTTTGCTAGAGTTTGTTCAGAAAATAATATTTCTTCACTAGAGTCCTACCGGAGTTATATTTCTGGGTGCATCTAAGGTTGTAGAGACAAATTTGAGatagagacttttttttgtcGTTGTTGCTTTTCACCTCGTTTGTGTCAAAATAAGAACATTAGCTGACGTGTTTAAAGAAATACTAAACCATATCTTGTGtccttacagacacacacacacacacacacactttatgcaCAGTGCCACACACTGACAAACAAGAATACACACTGTCTTCACAGATATACACACCCTAAGCATGTGTACACACACCGTTACTGCGATGGCCTTCTTCTCCTGAGAGAGAGCAAAGCGTGGAGAGAGGTGGTCACCAGAGGAGGAGCGCCGCTGTTACTGTAGCAGGGGCCCCCAGGGCCCCTCGCCAGTCCACACCCACCCGGTGTCCACCTCATCATACAAGGAAAACCAAGGGGAGGACACGAGGTACAAGACGGACAGACAAACGTTGGACCAGAAAAGTTTTACCAGCTTGTCTGTCTGCAAAGGGCGTCCTTGTCCCTCTTGGCTTTACCTTCTAgttttgtgtgtatgagtgtgtgtgtgtgcgcgtgtgcgtgtgtgtgtgcgtttcacTGGTCAACCCAAAATATCATTAAGGCCAGTTTAGCTATTTCCATGGATCCGCTATATAGGCCACAGTATAGGGAAACTAGAGCTGTTCTTTACttttgtactttacttttctTCATTCTGTCAAATCTCCTTCCACTTCACCATTAGCAGGTCAACACAGGCGTTCATGTGGCCCCGCAGCGATGCTAATGTTTCAAACACCCTGTGTGTGTACGGGGTAGAAGTTGAGGTGTTTTTAGAGAGAGCTTTACAAGGTACGTTTTAAGGAACAGTTTGACGATTTGGGAAATACGCTCATTCGCTTTCTTGCAGTTAGTTAACACGTTTCAAACCCTGTTTGAAACGTGGTTCCTATTGGCCGTATTTACATTCGGGCTGAAgcagtttcctgtctttttaattcaatttcgTTTTAATTATAGTGTCAAATTATAacaagttatctcaggacacttttaATGATAGAgtcggtctagaccacactctataatttacagagacccaacaacgATTCCCCCCAGGAGCAAGCGTTTGGTTCCTTGGTGTTTTCACAgtgcttttcatagtttttacACATCTAAGAATCTATGTGTGAATTTTCATATATCTACATGGACATTTACATGTCTAATTAGTATACAAAAGTGATTTTGAAGAGAGAAAGCAGTAAGAACGCTTGGGCGACGCTCAGGTGGCAGTATAGGTGGAAATTTAGGAGCTTTTACTGCCTAATCTGGAATTGTTGGAGCATgcagtttttacttttttaacagAAGTACGGTCACAGATGTGTTGACAGAAATGATGTTCATTTGGGCGACTTGTTAATATGGTTATTACTCCCCTTTTTACAGCAGGGAGAtagatgtgtctgtgtatggCCAAGGATAACACACTGCTAATTCACCGGTATTAGCTTCCTTTTGCCAACTCTTGTAAAGACAAAGATAAAGTAAATGGTGAAAATTATATTCTGTTAGAAAGGTAAGAAGTTACACTTTAGTTTGACACCATTGaaattaactgaaaacattacaataacttttatatttgtatttaaacaGATGTTTTTAATAGAACGTTAGCCAAAAAGTGTCAGAGCATGAACACCACGGTCATGTCTGTAACGTTACACTAAATGTAAAGCTGGAAGCAGGAGTcaattagcttagcataaagactggaagccgTCTCTTCTGGCTCTGTTTGTTTTACAACTATTGGATGGGTTACTATGAAATTCTGtacacatattaatgttttcCTCGGTATAAAACGTAATAACTTTTGGTTGTTACAcaacttttcctctagcgccatcatcaggttaaAACAGAACTACTAATATAAACCACGGACATTCccgtcagcctcagctgtactttgtgcttAGTGCTAGTTAGCAAAATAGCAACTAAGAtgatgaacatggtaaacattatacctgctaaaacatcagcatgttagcattgtcattgtgagcatgttagcatgctgatgttagcatttagctcaaagcaccactgtgacAAGTACAGACTCAGAGCTGTAGCGCGGCTggagctgtttccagtctttatgttaTGTTAAGCTAAGATAAGCTAATCGTCTCTTGGCTCTAGCTCTATATTTACATGACAGCGGtatcaaacattttcattaaactctcagcaagaaaatgaaaaagcgTATTTTCCAGGCTGTCATTCGATAGCATTTTATTGACTTTGAATCCAGTGTCAGATCCTTTAGGAGGCCTTTTAGCTTTCAACAGTTTTAAGTAACACAAGTTGTAACAAGTAACCTTATACTTAAGAACTCATAGGTTGACATTTAAAGAGCTAAAACTCCAGTTTTACCAGAGAAATTATGTTTTCTATATACCTAAATGACTACCTGAACATTTTGTACATTgttctttgttaaaaaaaaaagaaaaagaagaagattaaagagtcaataagaGACTCGTTAGCATTAAGCTAACTCGCGCTCGACTCCAACCAGATCCCAAATGAACCGAACAGCATCCCAAACCGGAGCAGCTGTTTTGAGGTACAATTCTGTGATTTGAAACACAGAGTCAAAGGTAAAACACAGTTTTAGACCAAAACAGCCTTCAGGAGAGTGTTTTCTTCTCACAAAAGAAGGCTGTAGACGCAACACTGCGTTAACAAAGCTGTTGCAGACTGACGCTGGCGGCCCCGACAGAGAACTTTTCCTCTAAATCATCAGGTTCCTTCTTTGTGGAGCGACTTCAGCCAGATAGATGACGTGAAATCTCGTTGAATCCTTGGCTTTAAGAGCAGATGGAGATTGTGGGGCTTCAGGGTTTTATGTCAAATTACGTGCGTTCACGTAAGTCCACATGCCTTGGCCTTCcccttttaaagctatagtgcgtagttttctgtctcccccatgaggaattctaagtaatgacaacaaaatgttgcctcaccccccccctccacacagttgctagtagccaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44908 lncRNA downstream 13123 43001165 ~ 43004598 (-) True G33807
TU44901 lncRNA downstream 19608 42995616 ~ 42998113 (-) True G33804
TU44890 lncRNA downstream 38328 42977860 ~ 42979393 (-) True G33795
TU44887 lncRNA downstream 44957 42970449 ~ 42972764 (-) True G33793
TU44837 lncRNA downstream 106515 42818808 ~ 42911206 (-) True G33759
TU44964 lncRNA upstream 12658 43317845 ~ 43318178 (-) True G33853
TU44965 lncRNA upstream 23365 43328552 ~ 43329092 (-) True G33854
TU44968 lncRNA upstream 30632 43335819 ~ 43336035 (-) True G33857
TU44993 lncRNA upstream 31623 43336810 ~ 43337510 (-) False G33875
TU44994 lncRNA upstream 31623 43336810 ~ 43337787 (-) True G33875
XM_039794520.1 mRNA downstream 294847 42704200 ~ 42722874 (-) True arfgap2
XM_039794521.1 mRNA downstream 294850 42704200 ~ 42722871 (-) False arfgap2
XM_039794517.1 mRNA downstream 329816 42664205 ~ 42687905 (-) False cars1
XM_039794516.1 mRNA downstream 329816 42664205 ~ 42687905 (-) True cars1
XM_039794631.1 mRNA downstream 355849 42658032 ~ 42661872 (-) True LOC120555681
XM_039795485.1 mRNA upstream 33467 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795487.1 mRNA upstream 33467 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795486.1 mRNA upstream 33467 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795484.1 mRNA upstream 33467 43338654 ~ 43390335 (-) True si:ch211-220f16.2
XM_039794116.1 mRNA upstream 91238 43396425 ~ 43400445 (-) False LOC120555429
TU44891 other downstream 26951 42985223 ~ 42990770 (-) True G33796
TU44774 other downstream 615585 42399291 ~ 42402136 (-) True G33711
TU44387 other downstream 1252825 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 2355100 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 8418180 34490660 ~ 34599541 (-) True G31955
TU45036 other upstream 147525 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 222394 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 469423 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_148 other upstream 631789 43936976 ~ 43937048 (-) True trnav-uac
TU45304 other upstream 780239 44085426 ~ 44089423 (-) True G34078

Expression Profile