RNA id: TU44887


Basic Information

Item Value
RNA id TU44887
length 2228
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G33793
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 42970449 ~ 42972764 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacctttatttatccaggtaagtcgattgagaacaacttctcaccTGTAACATTCACAccgttccacattcatacctggaagctgcccagtacaaccacagtctgatctgctggccactgagccttgctcaagggcacctcagtggtttCCCCAGATTTGTTTTTATCCTGCCGGTCTGGTGGATTGAACCAGCGGCCTGCCGGTCACACGCTCGCTTCTTAAACCTTTAGGCTACCGCTGCCTTTTAGCAGTGCAATGACTAAAACTCTAGTTCTACTAGCAATTAACTGGACACTTTATTTGAACTGAATTGACTGACCAATGTCTCCATTTTCCTTATAATTAACACCAAATTAGTTACTTCCAGGAACCTTCTGGGAAATtattcaaaaaaataCGACGGACATGACATGGGATGCAGTCACACCCAAAAGAATTTAAGTGGGCTGTCCGAGAAAGCCAACAGGAAACCAAAAGTAGGACAGGAAAGAGGCAAGATATTCTCAGAAGACTGAgtctttagtctttttttatctGCAGTGGAAAATGAGTTTCAGTATTTTATTGAAAGTAAGCAATAAATAATATTGTGATAAAAATAGTTTATAAGTACTCAGACTGTACATCATTGTTACAAGATCAAAAGACTCAATGGAAAGAGCAGGAATAAAACGACAGCGACATGATTTGCATTGTGCATAAAATGACTAAATCgcaaacagaaacaaatgcATTTCTACTTTAAGCCTTAACTACATGTAGGGGGAACTAAAACTCTTCGGTTCCTTCTCATTTGCCATGAAAGCTAACGGCGGAACCCGTGTTGGGAGCGTAGACGAGACACACTTAGACATGAGGAGCGTTGCTACATTCACAGGAGCACACTGGGGCTTCAGCTCTGAATATAAAACTGACACACAACGGGGCGagtaataataaataagaaCAGACGAAAGAGAGGAGTTAAGAAAACAATAAGGCTTGATATGAAATCTTCGTacaaagtgtttttaaaaaaggtttGTGGGTGGTGGATCGCACCGCCTTGAGGGGTTATCTAGTCACAGCGGGGATCGACTGAGGCCTCAGTGAAGTTGGTCCATGGAAGGAGTTTCCACACGTTGGACTCGTCCGTACGTTTCAAGTCCTCCTGTACgagtgagcctgtgtgtgtgtttctccagaggtgtgtgtgtggggtgggagGGGGTGTTCATTTTTGTGAAAGGGGGGCGAGTTGGGTGTGGTAGGGTCGGGATGAGTGGGGAAGTTTCCGCATGCAAGGTGAACTAGAGATGAACCTGGAATTCTGTTTTCACTTGCATCCGAAATAAGCcctcttgtttttattttttttctccgttACGGTTATATGGCTTTAAATTCTTAAATtcaagagtttttattttggttttgcaGATATGGAAAattaaaagaagagaaaaaggaaactATAATGCGTGTTTCACATGATATCTGTTGTCAACATCACCTGGCTTGCCAGCAGTTATTTTTAACGATGATGGATGACTCACAGTGTTGAGCAGTTTGTGAAACAGTCCAACAACTCCAGCAATTTGTCTGATATTCACACATCCATTGACCTAAGAGCTGCATTTACACAAAATCACAGGCAAGAAGCTACAAAAATTACAACAGTTAAAAAGGGCAAAGGATATGAATTAAGTTATATCACATGTCAAAGTCACTTAAGCATAAATTCAATGATTAGAATTTAAatcaaagagaagaaaaaaaaaaaaaggaaaaaaaaataaaacatacatcTGGTCAATAGAATCAGGATTATAAAAAAGATTAGATAAAATGTCTGTTGGTAGAAATATACAAACTCCAGACAATTGAAACCTTCAGTTACATACATCTGAGAGCTGAGCTTAATACGGGCACAGTGGAGAAACGTTTCTTTTAAAAAGTGGGTCGATTAAGGGGATAgaggcaaaaaaagaaaaaaaagtattacaTAGTAATTCTAAAATCAATTATATGTCCCATGGGtttacataaatacaataacaACTGTAGATAAATCTAAAAGGTTTCCACTAGGGATACTGGTGAGTAAGGTCTTTCTCTGTGatgacgacacacacacacaaaaaaaaaatctttttagtGTCCTTTGCAAGTCATTTCAGTTCATCATCCTGGTCTTGAACGCAGGGAACTCCCCTTCATCTTCTGACCAGCGGTTACCTATAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44837 lncRNA downstream 59243 42818808 ~ 42911206 (-) True G33759
TU44851 lncRNA downstream 72635 42869861 ~ 42897814 (-) True G33763
TU44828 lncRNA downstream 213625 42754455 ~ 42756824 (-) True G33753
TU44809 lncRNA downstream 278645 42662623 ~ 42691804 (-) True G33740
TU44802 lncRNA downstream 353082 42615624 ~ 42617367 (-) True G33735
TU44890 lncRNA upstream 5096 42977860 ~ 42979393 (-) True G33795
TU44901 lncRNA upstream 22852 42995616 ~ 42998113 (-) True G33804
TU44908 lncRNA upstream 28401 43001165 ~ 43004598 (-) True G33807
TU44928 lncRNA upstream 95015 43067779 ~ 43068072 (-) True G33820
TU44955 lncRNA upstream 203621 43176385 ~ 43177189 (-) False G33845
XM_039794520.1 mRNA downstream 247575 42704200 ~ 42722874 (-) True arfgap2
XM_039794521.1 mRNA downstream 247578 42704200 ~ 42722871 (-) False arfgap2
XM_039794517.1 mRNA downstream 282544 42664205 ~ 42687905 (-) False cars1
XM_039794516.1 mRNA downstream 282544 42664205 ~ 42687905 (-) True cars1
XM_039794631.1 mRNA downstream 308577 42658032 ~ 42661872 (-) True LOC120555681
XM_039796163.1 mRNA upstream 44957 43017721 ~ 43305187 (-) True LOC120556519
XM_039795485.1 mRNA upstream 365890 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795487.1 mRNA upstream 365890 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795486.1 mRNA upstream 365890 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795484.1 mRNA upstream 365890 43338654 ~ 43390335 (-) True si:ch211-220f16.2
TU44774 other downstream 568313 42399291 ~ 42402136 (-) True G33711
TU44387 other downstream 1205553 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 2307828 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 8370908 34490660 ~ 34599541 (-) True G31955
TU42327 other downstream 9154079 33806936 ~ 33816370 (-) False LOC120555494
TU44891 other upstream 12459 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 241870 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 479948 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 554817 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 801846 43774610 ~ 43813225 (-) False LOC120556522

Expression Profile