RNA id: TU44890


Basic Information

Item Value
RNA id TU44890
length 307
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G33795
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 42977860 ~ 42979393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGTCCATacggtcctgctgcactccaaATTTTCCTCCATATCCATGCGAGGCCTTGGGCATTTTGTCCAACTCCTTCTTCTTCAAGCTGGTGTGCTCCGTCGACACGGTGTCGCGCAGCTTGTGGATATCTATGTGCTCCTGATGTCCTGAGCCCTCCACCGTTTTGGCCCCCCagcgctgctccgtctccgacACGTCATTCTCAAAGTCGGGGTCAGTCTCCCAGTCGTCCCCTTCTTCATTTACAGCCACGTTGACTGACTGTCCTGCTGCTGCCTTCCACATCTTTACTGCAACACACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44887 lncRNA downstream 5096 42970449 ~ 42972764 (-) True G33793
TU44837 lncRNA downstream 66654 42818808 ~ 42911206 (-) True G33759
TU44851 lncRNA downstream 80046 42869861 ~ 42897814 (-) True G33763
TU44828 lncRNA downstream 221036 42754455 ~ 42756824 (-) True G33753
TU44809 lncRNA downstream 286056 42662623 ~ 42691804 (-) True G33740
TU44901 lncRNA upstream 16223 42995616 ~ 42998113 (-) True G33804
TU44908 lncRNA upstream 21772 43001165 ~ 43004598 (-) True G33807
TU44928 lncRNA upstream 88386 43067779 ~ 43068072 (-) True G33820
TU44955 lncRNA upstream 196992 43176385 ~ 43177189 (-) False G33845
TU44956 lncRNA upstream 197423 43176816 ~ 43177189 (-) True G33845
XM_039794520.1 mRNA downstream 254986 42704200 ~ 42722874 (-) True arfgap2
XM_039794521.1 mRNA downstream 254989 42704200 ~ 42722871 (-) False arfgap2
XM_039794517.1 mRNA downstream 289955 42664205 ~ 42687905 (-) False cars1
XM_039794516.1 mRNA downstream 289955 42664205 ~ 42687905 (-) True cars1
XM_039794631.1 mRNA downstream 315988 42658032 ~ 42661872 (-) True LOC120555681
XM_039796163.1 mRNA upstream 38328 43017721 ~ 43305187 (-) True LOC120556519
XM_039795485.1 mRNA upstream 359261 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795487.1 mRNA upstream 359261 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795486.1 mRNA upstream 359261 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795484.1 mRNA upstream 359261 43338654 ~ 43390335 (-) True si:ch211-220f16.2
TU44774 other downstream 575724 42399291 ~ 42402136 (-) True G33711
TU44387 other downstream 1212964 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 2315239 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 8378319 34490660 ~ 34599541 (-) True G31955
TU42327 other downstream 9161490 33806936 ~ 33816370 (-) False LOC120555494
TU44891 other upstream 5830 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 235241 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 473319 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 548188 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 795217 43774610 ~ 43813225 (-) False LOC120556522

Expression Profile