RNA id: TU44908


Basic Information

Item Value
RNA id TU44908
length 3334
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G33807
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 43001165 ~ 43004598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAATAACGCAACGCAAACAAGTTTATAATTCATAGTTTATTTattgaaacaaaaaacaaaaaagaacaagcAGGTAATGATGTGACTTAAGCAAACAGAGGTACAGATAAAAATAATGCATTTGAAAaaggtcactttttttttttttaattataaaaccCCAAAGATGAATTGAgtgaaagcacacacacacacacagacacacacacacacacacacacacacgattagagatgttccgatgtGAATGCTGTAGAACTTTCTTTATCATCCAGTTTGACAGCGAGTCAGAatggaaaaacaacataaataaaactactttaaagtagattttcttcaagGCTAAATTACGTTTTATCAAATCGGTGCATTGACTCCAGTACTttccgataccagcattttaggcggtatcggaggcttttccgATCTGGTATCGGAACACCTCTAGTCATGATGAGGGATGTTAGCGCCGCTCCAGACCAGTGGTCGTCACGCCTCCCATACGGAATAGGACAGGACAACCCGAGCGCTCAAGGCAGCAAGACACAAATACACGAGTCCAAAGAAAACCTCACAGAGACAGGAAACCAAAACAGGTTTTCAAATCTATTATTTCTCAATAAATCATGATCTCTCTGTACATGATTCTAAGCATGATATCAACAATAACCAGAAGAAAGTATGAAGAGGATTCGAATAATACTATGagctgtagtgttttttttttttgtttagcttGTGATTTGCCACAGCGGCGAAAAGAAGCCTTTGACATCATGGCCACGTTATTTTCTCAACAACTTGGACATCAGCAATTATGGATCATTTATAACCAAACACGACGATCGCTGCAAGTGCTCAGACAACAGAGAACCGATTGGTACTACATGAAGCTCCAACTGAAGCTACAGCTAAACTGCTACGTTTGGGTATTTAAGAGACGTTTttagccccccaaaaaaaacacatatcaCAGGACCATTTATGTATACTGGGCATGCACGTGtcagtgtaaacaggaagcagcatgtacACTCCGCCCGGCTGGTGGTAGTTGCTTAAGACTGACAGTGTTGAAAATGGTCTCCGCTCAGTATTGGTAGATTAAATCATACGGTTAACAAGAGGTGTTGTTTCTGCGTCTCCGTTTGTGCCCGTCCAGAGTCCAAAGCAACGCCGGAGTTTTCGAACCTAAAGGTCAGCGGCAGTGTTTctaaatgtctccgttttaggggctcggaaacgcgttattatggaacccacgcaacttccaggcaagacccgcctttcaatagcattcacacgctactattggccaggcgtccatgttTACTGAAGGTAAcagaacccgatttgttcaggtcctatcccctgaccaatcggctatcttAACCTTAACTtatcgaggtcaatgcctaaccccaaccaatcgggctGCTTCATTGCCTAGAAGTTACATGGGATCCATAACAACGGCGAGGTAGCCCTGGTAGTGTGGACGCGAGGCGTAAATGTAGCGAAACATAttggtttttaaaccaaaaaaaaatagtataaatGTAGCTTgtgttgtaatgtttttttttggagccTGCAACGTGGGAAAGGCGTCAACGGCAAATTTGGCAGACTTGAACTTCCCTCTGGTGTGCGATGATGCCATCAGACAGAGTCCACCTAAAAAGGGTTAGCTCAGAGAAGCTACATGCTAGCCCTGATCTGGCCTCTCACTGTACTGTATGCCCTCCCTGGCTGGCTCCGTCTAGGATGTAGTCTCGTTGTAGGGGCTCGGAAAACACCGCAGTAGCGTGGACACGAGGCGCGAACGTCGcaaaaagaagacatttttaaaCCAAGACGTAGCAGGGTAGATGTAGCCTTAGTTCCCCCATTGTGGATCGACGGGTGCAGCATCAACCAGGAGGGGGAATTTAAACTCCTGTGCAAACAGACCACAAAAGCAAAAGGTCTTTTTGGTCCACAGTCGATCGTACGGGACAGTATATAGCCATCAATATACATTATAATCCAAAGTGGAGGCTTGTTCTCCACTTTAAAAACTGCTCCTGCTTACATTAAGCCTGAGCAGCCGTACACAAGACTTATTCAAGCTCACTGCTATCATTACTCTGGTCTTTGGTGAGACTAAAATTCCTCTCGCACATATGAAGAAGCAACAATACCTGAAACTGATCTCTAATACGGTATCtggagagataaaaaaaaaaaaaaagctttgataTGTAACTTCTAGGTGTGAATCATTCGTCCTCCGAGACCCTGAACATCTGTCCAGAGGTGCAGAACAAAGCCCAGATGAGCTCTATATATTCTCTAGTTGagtctagggctgcacaataaatctgatttttttaatttaaatcgACATTGCAACTTTAACTTGCAATAACAATAAACACATCACGAAAATGATTTTTTGAGTTAGCTGAATCAGtggaaaactgcactttaaaatgtaactcattattttttaaaggtttgtgttcagtttaatgttcaataaaacaaagatggaaattatttccattcaggctttttttatttatttaattttttatttaacaagcaaagtgttgtattttagcagaatactgaaagcagcagaactgagttcACTTTAACATCTGTAAATGTATCACAAGTGATCTCGTTACCGCGACGTTCAACAAGGTTATCTCCCGTTCCCTGGTATTGTGCAGCCCTGACTGAGTCGTTCTAAGATAAGTCTCCCCGTCTTCTGCTGCCCGGAGAGAAACAAAGGGATCTGAGAGTGGAAGATGTAGCGGAGGGATGGAAAAAAACGGAGCAAAAGAAAGCCGGTTAGGAGACCTGCAGACGTCTCGCACAGGAACAGAAGGCGATGAGAGAGAAGACCAAAGTGTGAAAAAGGAGGATTCCAAATTGTCTCCTTCCTTCGGCTGGTGTCGGCGGGGCGTCATCATTGCCGAACCTCCACGTAGTTGGCGGGGAAAAGGCCGTAGGCGCCTCTGCACACGCCCCGCCACCAGCCCTCGTCGATCATCTCGATGTTGGTGATGATGTCGTCGGGGTCGAAGGATATCTCGTCGTCGCCGGCTGGGAAACGGGAAGAGATGGATTGGTGACGGAGGATtcataaatattacatttagccGACCCTTCTATCCAAAGCCActttcaaccttgaaggtaCAAACTCAGACAGCAACAAGTGCGAGCACATTAGCTTCAAACAAGCcaaaccacaaagagacacatgacGGTGCAACTGtacgtttttttctcctatttgCAGCAGAGCTGAAAGGATTAGTCAGATAAACGTGACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44901 lncRNA downstream 3052 42995616 ~ 42998113 (-) True G33804
TU44890 lncRNA downstream 21772 42977860 ~ 42979393 (-) True G33795
TU44887 lncRNA downstream 28401 42970449 ~ 42972764 (-) True G33793
TU44837 lncRNA downstream 89959 42818808 ~ 42911206 (-) True G33759
TU44851 lncRNA downstream 103351 42869861 ~ 42897814 (-) True G33763
TU44928 lncRNA upstream 63181 43067779 ~ 43068072 (-) True G33820
TU44955 lncRNA upstream 171787 43176385 ~ 43177189 (-) False G33845
TU44956 lncRNA upstream 172218 43176816 ~ 43177189 (-) True G33845
TU44964 lncRNA upstream 313247 43317845 ~ 43318178 (-) True G33853
TU44965 lncRNA upstream 323954 43328552 ~ 43329092 (-) True G33854
XM_039794520.1 mRNA downstream 278291 42704200 ~ 42722874 (-) True arfgap2
XM_039794521.1 mRNA downstream 278294 42704200 ~ 42722871 (-) False arfgap2
XM_039794517.1 mRNA downstream 313260 42664205 ~ 42687905 (-) False cars1
XM_039794516.1 mRNA downstream 313260 42664205 ~ 42687905 (-) True cars1
XM_039794631.1 mRNA downstream 339293 42658032 ~ 42661872 (-) True LOC120555681
XM_039796163.1 mRNA upstream 13123 43017721 ~ 43305187 (-) True LOC120556519
XM_039795485.1 mRNA upstream 334056 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795487.1 mRNA upstream 334056 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795486.1 mRNA upstream 334056 43338654 ~ 43390335 (-) False si:ch211-220f16.2
XM_039795484.1 mRNA upstream 334056 43338654 ~ 43390335 (-) True si:ch211-220f16.2
TU44891 other downstream 10395 42985223 ~ 42990770 (-) True G33796
TU44774 other downstream 599029 42399291 ~ 42402136 (-) True G33711
TU44387 other downstream 1236269 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 2338544 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 8401624 34490660 ~ 34599541 (-) True G31955
TU44958 other upstream 210036 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 448114 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 522983 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 770012 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_148 other upstream 932378 43936976 ~ 43937048 (-) True trnav-uac

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00007109 True 4419 mRNA 0.47 15 CM030123.1 4210891 ~ 4222905 (-)