RNA id: AMCG00007109


Basic Information

Item Value
RNA id AMCG00007109
length 4419
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00007109
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4210891 ~ 4222905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGGAAAGCTGCAGCtgggaaaaacatttcaatcaatGCTGACGATGGCGGTGACGACTGGGAGACCGATCCAGACTTTGAGAACGACGTCTCTGAGAAAGAGCAGCGATGGGGCGCCAAGACCGTGGAAGGATCTGGACACCAGGAGCACATTAACATTCACAAGCTGCGTGAAAAAGTGTCGGTGGAGCACTGCAagctgaaggagaaggagcAGGAGAACATGCCCAAGGCCTCTCATGGCTACGGAGGGAAGTTTGGCGTGCAGCAGGACCGAATGGATAAGTCTGCCGTCGGCCACGAGTATCAGAGCAAACTGTCCAAGCACTGCTCTCAGACGGACTCGGCGAAAGGATTCGGCGGCAAATTTGGAGTTCAGGCCGACCGAGTCGATCAGtcTGCAGTTGGGTTCGAGTATGCTGGCAAGACCGAGAAACACGCTTCACAGAAAGACTACTCCTCTGGTTTTGGGGGGAGGTATGGTGTTCAGGCTGACCGTGTTGACGAGAGCGCGGTAGGATTCGATTACCAGGGCAAAACTGAGAAACATGAGTCTCAGAAAGACTATTCCAAAGGCTTTGGTGGTAAATTTGGAGTGGAAATGGACAAAGTGGACAAAAGTGCAGTGGGATTCGAGTACCAGGGGAAGACCGAAAAACACGAGTCGCAGAAAGACTATGTTAAGGGGTTTGGAGGGAAGTTTGGTGtccagacagacaggcaggacAAGTCCGCCCTCGGCTGGGACCACCAGGAGAAGCTGCAGCTGCATGAGTCTCAGAAAGGTACTTGTGTTTCGGGGACAGTGTTTCACGCTGCGGGCGTTCAGATGTTTTCTGACTTTCTCATTCTGGGTATCCTTGCTTTTCCCCTgcataaatataatgtttttatttatgcatttgcttatttgtttcctttttgcaTCGATGAACTGGGTAggtatttttgctttttatgtCTTTGTTTACTACATATtcagctgaaataaaatgttcatacATGTGTAGATAGTTGGATATAATGGATTTGAACATCACTTACTGCCCCTTATTAAAAGGATTCACACGTTTTTACATATTGAGTTAAACATTGCCAAACTAAATGCAGGCAAATCCACGTAGACAAAACCTTACTCAAGatcctttaataaaacatcagCGTTGGTTTAATGGTAGGGACTGTGTAACAGTTCAGTAAAGGTCATGTACATACGTCTGCTGTTATCTTCTGTTAATGTCCGCATGAGAGATGGGGGTGGGAACGTATTCCTCGTTAAAGACAGTCTGTGTTGTCCCGAGATCAGAAATTAACCCTGTGCCCCCTTGGTtacacagtgtgtgttttgtcactTATCACTGTATATGAAATGCTGATCCTTTGaatatacagtattgtatgGCCATAATAAGCCGCTGCGATCGGTACACTCCTTTCCGTTGGAATATATTTATTGAGTTAGCTAAAACGAAATATATAAACTGAGGGAATAAGTCAAACTCCTCATCCGAAATCCAAATGTTGCTTTGTCTGTAGAAATAGCCTATGTAAGATTTAACAAGTTTTTAGTTAGCTGAGCAATCCATTAGTGAGATAATTCCCAATGTCAATAGATGTTCAACTGATCTGATTTTGTGTAATTCTGAGAGGTGTGCATGATTTAAAGggtttattacttattttgcattgatttgaagcacaattgtgtgtttttacgAGACCAGTAAtggtgttttcattcttttaaaatggACATTGAATTGAAAACATCAATGATGggaaaatgtatgtgttgtaGGAAACTGCAATACCTTCTACAGAAGTCTCAGAATATCCTAAACACCTGTAAAAACTGGGGGTAAGATTGAATCATGATGTGAAAAGGAGCCTTTGCTTgtaaagagaggaaaaaaaaaacacttgttttgGGTTTTACAATTTCACTAACTCGGATCTCAGCCTTGTTTATTAAACAGAACTTTATCATTTATCTCTCACCCACTGAGGCTAAAAACAGTCTTTTGAAAACTAATTTTTCATCTAACAAAATTGAAGTGGCACAAACTGGGAGTCTAACCTAGTTTGTGGAATATGTAAATTTAAGGAAAAATGAATGGCTTCTAAAATAGAATTCTGGTCAACTGCATTCCGTGCCGCTTTAATCTGGTTATAGGCCGCCCGGAACAGTTTCTCCAAGATGAGACTCGGCACAACTTTAAAATGCCATCCCAGTGCCGTGGAGGAGACTTTCTGTGGAAGGGGTGGTTTTATTTAACGCACTCTGGTTTGAATTCCCTTTGTGTTCACCCTGTTGTGTTTGACCTTCTTTCCCGATGATGATTGTGTCTCTCCTACTGTGGCTTGTGGATTTTTTCAGATTATAAGAAAGGGTTCGGAGGGAAATACGGTGTTCAGCTGGAGAGGCAGGACAAATGTGCCGTGGGCTTTGAACACCAGGAGAAACTGGCTAAGCACGAGTCCCAACAAGGCACAGTTGCACTAAAGCTACCGGCAGAACTGTAGCGCTCTCCAGCCCAGATTTGGATCTATAGATTTGGTTTCTCCATTCCGTGTGTGTTGATACAATTGACGTTTACATGACTTTATCTACAAGATAGATCAGCGATTTAACTTGAAGTAATGATGCATTCTAGATATGAGCCGacctattttatttatgaagtaagACCCCTGGTTCCTCATTGCCAGTGCAGTCTGAAATGTCCAGAAGGTGGCACTAGTGCCCTGAATACAAGTTCAGACTTTAGGAACAGGCGATTCCAGTTTGACTATTGAAACCCCAGTAATAACGCACCCCACCATGATCATGTCTGCAAGATGGCTGATCTGGGTTTTACTTATTTCTTTGATTATAATTATGCTTAGATGTAAAATGGCAGTAAGTGCTAATCTTTTAAAGCTGGGGTCGTAGAGTACTACAGTTTTGGAAAGTGCCTTCATTTGTGTATCCCACCCCCCCTACAGTGAGCGTGCTTGGATGTGTCCGCCCCTCTAATCCCGTCCCCATTGCTTCTCGCCGCTGTGGACGGATGTCCTCTTTGCTCGCTGCTCCAATGCACCCTGCCAGGCAGCCTCGCACCCAACGCAGCTTTGGATGCAGCTCATGACCCAAACCAGCTTCCAAATGAAACAGTGTCATGCGCCATTGAGAAAAAGGCTGGAAaagacttgttttgtttgtttgttgtagcTTTGCGCACAGGGTTGCATGACATTGCATtccacagtttttttctttgcgGGGTTGTTGGAGGAACAGCAGTGAGTCGGCTGTCGTTAActgtgatgtgttgtgttgttgtagaCTACTCTCGAGGGTTCGGTGGGAAGTATGGTGTTCAGAAGGACCGGATGGATAAGAGTGCCGGTACATTTGAGGTGATTGAGAAGCCAAGTCCGGCCTATCAGAGGACCAAACCAGTGGAAGCCAGTGCTGGCAGTGGTGCTAGTAGCATCAAGGCCAGGTTTGAAAACATCGCCAAGCAGAAGGAAGAAGAAGATCGCAAGAGGGCGGAGGAGGAAAGAGCTCGACGCCAGGCCAGCGAGAAACAGGAGCAGGATGAGGCCAGGAGGAAGATTGAGGAGCAAGCCAAAGCCAGACCTCCATCTCCCGAGCCCGAGCCGGAGCCCGAGCCGGAACCCGAGCCCGAGCCTGTGCCCAAGCCCAAGACCAAGACCAGTCCGGCACCTGTCCTCCAGAAGAAGGTCGAGTGCCCAACTTATGAGACACAGAGCCTGTATTTGAGCTCCTCTCGGGGCCTGGCTGAGGAGACCCgcAGCATTAACAATGTTTTCTTGCAGGACGTGTCTCTGTACGACGAGCCGGCCTATGAGGCAACAGATGAGCACTCCCATCCGCACGGGGCAGACGCCACCAAAACACAGGCGTCCAGCTACCAGGATGACGTCTACGAGGTGGAGCCTCAGGGGACTCGCGAGCAGGAAGCGATTTACCAGGACCCGGACGAGGACAGCCAGTATCAAGGAGGAGATGCTCAGACCTACACGGAGTATGGAGAAGACCTGGGCGTCACCGCGGTGGCTCTGTATGACTACCAAGCAGGTGAGCAACGGGCATCAGCTGGGCTTCCCTCACAAGACAACCATGCTGTACCCCGAGGGGATTCGCTGCTCATCAGAAACGCAGGCAACCCCGCCGTCACCGCAGCGCTGAGGACGGTCGAGACTCTGGACCAGGCCAGGCACTTGCGTTTTTTTAACCTGAACCAAGTCGATCCTCTCAATGTTGTCGTTTCAGCCGGCGACGACGAGATCTCCTTCGACCCCGACGACATCATCACCAACATCGAGATGATCGACGAGGGCTGGTGGCGCGGTGTGTGCAAGGGCGCGTACGGGCTCTTCCCAGCCAACTACGTCGAGGTCCGGCAATAA

Function

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26383 lncRNA downstream 708046 3501883 ~ 3502845 (-) True G21122
TU26358 lncRNA downstream 734092 3476077 ~ 3476799 (-) False AMCG00007091
TU26340 lncRNA downstream 802183 3408154 ~ 3408708 (-) True G21082
TU26287 lncRNA downstream 1200636 3006398 ~ 3010255 (-) True G21036
TU26285 lncRNA downstream 1287864 2922660 ~ 2923027 (-) True G21034
TU26560 lncRNA upstream 56411 4279316 ~ 4279569 (-) True G21249
TU26603 lncRNA upstream 134808 4357713 ~ 4373125 (-) True G21286
TU26693 lncRNA upstream 458144 4681049 ~ 4682462 (-) False G21367
TU26694 lncRNA upstream 458144 4681049 ~ 4710926 (-) True G21367
TU26762 lncRNA upstream 719166 4942071 ~ 4943851 (-) False G21414
AMCG00007101 mRNA downstream 292163 3912257 ~ 3918728 (-) True AMCG00007101
AMCG00007096 mRNA downstream 464666 3743208 ~ 3746225 (-) True AMCG00007096
AMCG00007098 mRNA downstream 477973 3727038 ~ 3732918 (-) True AMCG00007098
AMCG00007097 mRNA downstream 493272 3705404 ~ 3717619 (-) True AMCG00007097
AMCG00007093 mRNA downstream 530490 3655370 ~ 3680401 (-) True AMCG00007093
AMCG00007108 mRNA upstream 7013 4229918 ~ 4250154 (-) True AMCG00007108
AMCG00007107 mRNA upstream 39368 4262273 ~ 4262575 (-) True AMCG00007107
AMCG00007112 mRNA upstream 53438 4276343 ~ 4278228 (-) True AMCG00007112
AMCG00007113 mRNA upstream 62542 4285447 ~ 4323100 (-) True AMCG00007113
AMCG00007114 mRNA upstream 129151 4352056 ~ 4355054 (-) True AMCG00007114
TU26061 other downstream 2040321 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2065076 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 3257829 952236 ~ 953062 (-) True G20630
TU25699 other downstream 3362602 845929 ~ 848289 (-) False G20609
TU26783 other upstream 818754 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 819615 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 833882 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 1593904 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 1784735 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU44908 True 3334 lncRNA 0.43 2 NC_053114.1 43001165 ~ 43004598 (-)