RNA id: TU62665


Basic Information

Item Value
RNA id TU62665
length 2792
RNA type TUCP
GC content 0.41
exon number 2
gene id G46817
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3283041 ~ 3285923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcagaacagcatggatggatttttttcaaagtttgtatgtgtggaagcaccagagacacaaaagaacaccccaaatcccagaaaaagtgatttttttcataatatgggcactttaatcaTTTTGGTATCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGGAACACCTTGCTAGGCTAACTTCCCTATGCTACCTCCCTCAAAACTCCCTTTTTTAAACTAAAGATAGCTTTCAACctgcacttcctgtctccctgacacagagagaaaagtcTCCTCTTAAACATAAtacacaaaattaaaacatcAACCCAATGTGTATTGAATAAACTCCCATATTGATACATGATTAATAGTGAATCTTGCTAAACATACGTTACTTAGAAAAAAGTGAATATATGTGTGGGCCCTATAAAATACTGGGTGACAGATTTCTTGATTAAAATTGATTATATGACAGACATTACAAGACAAACCAATatctaataaaacatttaaaataagagTATTCCTTTTCCTACCACACAATATAATGTCTTCTATCTAGATATTTTCTAGAATATTTTTGTTTGacacttgagaagttttgcttggactTAAAGGCACAAACATTATTCCATGTCACCAccctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcttccacagtcctctccatcagcttctgtttccatcggaccaacacatttatgtgttttgacatcagaacgccagatttcttacagattgaacagctgaaaggtttttctccagaATGAGTCATCATGTGGTTCTTCAGGGTTCCACGTTGAGTGAAAGCTctaccacactcagagcagctaaaagatttttctcctgtgtgagttttcATGTGTGACCGTAAACTTCCTTTCCGTGTAAAAGATGcattacaaactgagcagctaaaaggtttttctcctgtgtggattctcatgtgtgaccgtaaagtttcactctgtgtaaaagatgtattacactcagagcagctaaaaggtttctctcctgtgtggattctcatgtgtttttttaaacttccactctgtgtaaaagatttcttacaaactaaacagctgaaagctttttctcctgtgtgagttatcatgtgtctcttcagggTTCCACTATCAGTGAAAGCtttaccacactcagagcagctaaaatGCTTCTCTCCTGtttggattctcatgtgtttttgtaaatatcgactgtgtgtaaaatacttcttacaaactgagcagctaaaaggtttttctcctgtgtggattatcatgtgtctcttcagacATGACTTGAAgccaaatcttttcccacactcagagcagctgaatgttttcttacatcttgaatcatgttttaGAGCATTTAAAGCTGACTggggttctctggtctccttccaattagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacaaacctctccatcagcttctgtttccatctgACCAACACATGTATGTGTTTTGACATCAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgccATGTGTGACAGTACAtttcctctctgtgtaaaagatttcttacagactgagcagctgaaaggtttttctccagaATGAGTCATCATGTGGTTCTTCAGGGTTCCACGTTGAGTGAAAGCTCTACCACACTCACAGCAGCTAAAAgatttttctcctgtgtgagttttcatgtgtgaccgtaaacttcctttctgtgtaaaagatttattacaaactgagcagctaaaaggtttttctcctgtgtggattctcatgtgtgacTGTAAATTCTGACTctgtgtaaaaaatgtattacactcagagcagctaaaaggtttctctcctgtgtggattctcatgtgtttttttaaacttccactctgtgtaaaagatttcttacagactgaacagctgaaaggtttttctcctgtgtgagttatcaTGTGGTTCTTCAGTTTTCCACTATCAGTGAAAGCTTtgccacactcagagcagctgaaaggattttctcctgtgtgagatCTCAGGTGTCTCTTCAGATTTGACTTGCGgccaaatcttttcccacactcagagcagctgattGTTTTCTTACgtcttgaatcatgtttcagagagtttaaagctgactgagattctctggtctccttccaatcagcactcacatcagtctcaggttcagaagagtctccagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacagtcctctccatcagtttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttccgcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcagagGGAACCCAATCTTTAACCACTGACAGCT

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62705 lncRNA downstream 124469 3157691 ~ 3158572 (-) True G46856
XR_005639267.1 lncRNA downstream 153188 3121212 ~ 3129853 (-) True LOC120559426
XR_005639266.1 lncRNA downstream 156425 3121212 ~ 3126616 (-) False LOC120559426
TU62649 lncRNA downstream 211641 3070176 ~ 3071400 (-) True G46803
XR_005639269.1 lncRNA downstream 223587 3056573 ~ 3059454 (-) True LOC120559428
XR_005639268.1 lncRNA upstream 161286 3447209 ~ 3450188 (-) True LOC120559427
TU62770 lncRNA upstream 205863 3491786 ~ 3492760 (-) False LOC120559401
TU62664 lncRNA upstream 230780 3516703 ~ 3517741 (-) True G46816
TU62775 lncRNA upstream 232514 3518437 ~ 3518669 (-) True G46920
TU62853 lncRNA upstream 418098 3704021 ~ 3704389 (-) True G46979
XM_039801096.1 mRNA downstream 29990 3251882 ~ 3253051 (-) True LOC120559400
XM_039799574.1 mRNA downstream 63258 2859280 ~ 3219783 (-) True LOC120558537
XM_039801090.1 mRNA downstream 90871 3185278 ~ 3192170 (-) True LOC120559395
XM_039801085.1 mRNA downstream 105187 3173548 ~ 3177854 (-) False LOC120559391
XM_039801083.1 mRNA downstream 105188 3173356 ~ 3177853 (-) True LOC120559391
XM_039801112.1 mRNA upstream 45846 3331769 ~ 3339720 (-) True LOC120559411
XM_039801082.1 mRNA upstream 97767 3383690 ~ 3426317 (-) False LOC120559390
XM_039801079.1 mRNA upstream 117228 3403151 ~ 3426321 (-) True LOC120559390
XM_039801081.1 mRNA upstream 117228 3403151 ~ 3404959 (-) False LOC120559390
XM_039801111.1 mRNA upstream 172504 3458427 ~ 3459070 (-) True LOC120559410
unassigned_transcript_223 other downstream 338117 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 338714 2944256 ~ 2944327 (-) True trnaq-cug_2
TU62526 other downstream 935537 2346505 ~ 2347504 (-) True G46698
XR_005639246.1 other downstream 947340 2329654 ~ 2335701 (-) False LOC120559407
TU62955 other upstream 669103 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 669681 3955604 ~ 3956382 (-) True G47059
TU63179 other upstream 1444578 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 1446873 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 3410522 6696445 ~ 6721729 (-) True G47624

Expression Profile