RNA id: TU67455


Basic Information

Item Value
RNA id TU67455
length 929
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G50476
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17063818 ~ 17064746 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTATTTGCCAAGTACATTTACAAATAGGAGGAATGTATcttctgcatttaacccattgTAACTAattaggagcagtgggcagccaaagTCTGGcgccggggaccaactccagttgTAATGTCAGTACCTATGGCAATGGCAGGAGTTActtagcatgcatgtctttatggggGGAGGGGAGGTCTGGATCGGGGATCAAACCCAGTACTCATAGTGCCTACTTACTGTGCCACCATTCCACTGCCACTTAATGCATAAATCATGCtaaaacagtttactgtaatATGGACATTCTgagattccttttttttttttacatatttcaaCATTATCAAATGGCGTGCATAAGTATAGCAGCAAATTAGCATTTTAAGTAGTTTGACATTATGGGAAATACGCTTAatcgctttcttgccaagagttagatgataTGCCTCTCTCACGTCTAGCAACTAGTTAGCtttgcttagcataaagactgaaaacaaatggaaacagctagctagctaggttgtGTGCAGTTGCCAGGCATCCAGCCGAGACTCCATGGAGTCACTGCTCCTGATGATTGGCTAATTATCATTTTAACATGTTGGTTTTAACACCACAGATGCTGATGGATTTTGTTACTGGAGGAAGCCATACTAgatgttttcagtctttatgctatgccaagctaagctaaactaagctaagagTCTCCTGGCTCCGGCTGAGAGTGGTATTGTATTCTTATATCACTATCAGAATAAAACTAAACGAGCAAAGTACTGCTTTAATACTGTGCATTAGTATgcataaaatacagtatattaaatttttttctgtaccattaaaaaataaattctctGAGATAAAATTTATGACATATCATTGATGTGTATCAATGAACATCTTACAACCTATATTGTAAATTGATAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67417 lncRNA downstream 118846 16944771 ~ 16944972 (-) True G50443
TU67335 lncRNA downstream 349070 16714061 ~ 16714748 (-) True G50389
TU67328 lncRNA downstream 384142 16666050 ~ 16679676 (-) True G50382
TU67324 lncRNA downstream 400773 16660998 ~ 16663045 (-) True G50378
TU67316 lncRNA downstream 482836 16580076 ~ 16580982 (-) True G50371
TU67456 lncRNA upstream 251 17064997 ~ 17065274 (-) True G50477
TU67479 lncRNA upstream 6376 17071122 ~ 17074733 (-) True G50483
TU67480 lncRNA upstream 6376 17071122 ~ 17074355 (-) False G50483
TU67477 lncRNA upstream 7990 17072736 ~ 17074355 (-) False G50483
TU67481 lncRNA upstream 7990 17072736 ~ 17074355 (-) False G50483
XM_039800425.1 mRNA downstream 62509 17000401 ~ 17001309 (-) True LOC120559002
XM_039800861.1 mRNA downstream 91525 16962272 ~ 16972293 (-) False LOC120559259
XM_039800859.1 mRNA downstream 91531 16961498 ~ 16972287 (-) True LOC120559259
XM_039800858.1 mRNA downstream 91537 16961498 ~ 16972281 (-) False LOC120559259
XM_039800860.1 mRNA downstream 91541 16961498 ~ 16972277 (-) False LOC120559259
XM_039799620.1 mRNA upstream 15493 17080239 ~ 17098500 (-) False pabpc1l
XM_039799619.1 mRNA upstream 15493 17080239 ~ 17098174 (-) True pabpc1l
XM_039799621.1 mRNA upstream 15493 17080239 ~ 17098170 (-) False pabpc1l
XM_039799622.1 mRNA upstream 16127 17080873 ~ 17098178 (-) False pabpc1l
XM_039799623.1 mRNA upstream 33879 17098625 ~ 17104961 (-) True LOC120558578
TU67071 other downstream 779962 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2210001 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2210001 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2529213 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2918596 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 623369 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 774798 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1815619 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2635027 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2636584 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile