RNA id: TU69234


Basic Information

Item Value
RNA id TU69234
length 456
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120559689
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21513003 ~ 21515984 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGTCTCCCAGAAAAGCTTCCCCgcgctgactgcagcagacgCGGAGGACTTGATTGGAAGTTTGCCCCACACAGACGgtcagctgagaaggactgagccttcaaaaccatggagctctatttatttatttttttgcggaagcaagagctgttggccatcttctacactgctgccatcctcctgcctcTGACCCTCTGGCACGTGAtacagatccctgcacacaaaaacaaccagacacaagaacagcttctttccctctgccatcactctcctgaactgctgataagtggggtcatccccactttggccattcacctacacattacatactttatcattccaatatgcattttgcacaatacatttgcactattactttgcactctacatccttaaaaattttgtatttttgtattattcattgtatattgttaattaaagttttaaatccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69226 lncRNA downstream 9741 21498144 ~ 21503262 (-) True G51834
TU69153 lncRNA downstream 117303 21394442 ~ 21395700 (-) True G51767
TU69100 lncRNA downstream 219158 21291146 ~ 21293845 (-) True G51721
XR_005639239.1 lncRNA downstream 290371 21219967 ~ 21222632 (-) True LOC120559347
XR_005639348.1 lncRNA upstream 103 21513705 ~ 21515984 (-) False LOC120559689
XR_005639349.1 lncRNA upstream 18798 21532400 ~ 21532964 (-) True LOC120559690
TU69247 lncRNA upstream 34911 21548513 ~ 21548738 (-) True G51848
TU69256 lncRNA upstream 53057 21566659 ~ 21566900 (-) True G51857
TU69263 lncRNA upstream 63759 21577361 ~ 21578251 (-) True G51864
XM_039799468.1 mRNA downstream 35895 21474380 ~ 21477108 (-) True sp5l
XM_039799244.1 mRNA downstream 109995 21396220 ~ 21403008 (-) True ankrd33aa
XM_039799243.1 mRNA downstream 109996 21396220 ~ 21403007 (-) False ankrd33aa
XM_039801579.1 mRNA downstream 120243 21379367 ~ 21392760 (-) True acvrl1
XM_039801193.1 mRNA downstream 136769 21363300 ~ 21376234 (-) True acvr1ba
XM_039801611.1 mRNA upstream 66602 21580204 ~ 21606297 (-) False b4galnt1a
XM_039801610.1 mRNA upstream 66602 21580204 ~ 21606297 (-) True b4galnt1a
XM_039801614.1 mRNA upstream 107369 21620971 ~ 21623462 (-) True tac3a
XM_039800435.1 mRNA upstream 126736 21640338 ~ 21640949 (-) True LOC120559010
XM_039801667.1 mRNA upstream 136801 21650403 ~ 21715402 (-) False znf385a
XR_005639338.1 other downstream 313960 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 560485 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 560485 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 560994 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 460099 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 709547 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1016004 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1700496 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1700496 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile