RNA id: XM_039800034.1


Basic Information

Item Value
RNA id XM_039800034.1
length 1987
RNA type mRNA
GC content 0.42
exon number 6
gene id timm17b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12494005 ~ 12499465 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaatcgCCTGAAAATCGAGGAGAGTTGACGACACGACTTCCCACAACACACCACACGGCGCGCACAATGATGACGCAGCTCCGTTCTCCTGACGACAACAAACATGGAGGAATATGCCCGTGAACCTTGTCCCTGGAGAATAGTAGATGACTGCGGAGGTGCTTTCACCATGGGTGCAATTGGGGGAGGAGTGTTCCAGGCGATCAAGGGCTTTCGTAATGCCCCTGCAGGTGTTGGACACCGACTGAGAGGAAGTGCAAACGCAGTGAGAATAAGAGCTCCACAGATTGGAGGTAGCTTTGCTGTGTGGGGAGGACTCTTCTCCACAATCGACTGTGGTTTAGTCCGCCTGAGAGGGAAAGAGGATCCTTGGAACTCTATAACAAGCGGTGCCATGACTGGGGCCATCCTGGCAGCCCGCAgTGGGCCGTTAACTATGATGGGCTCTGCCATGATGGGGGGAATATTGCTCGCTCTCATTGAGGGTTTTGGGATCCTTCTAACCAGATATACAGCGCAGCAGTTTCAGAACCCTATTCCCTTTGCAGAGGACCCCAGTCAGTTACCTCCAAAGGATGGaggtcagcagcagcagggggcaaAGGGGCAGTTTCAGTAGAGAGCAACAAGGACTGAGACCAGCTGTGGACACAGTGAGTCAGACCAAAGAGTAGGGTGGGGACACCAGACATTACAGCAGGTATCAGGATGACCAGGATGTGGAGATACTGGTCTCTACAGTGGTGTCAAGTAGTTGCACTATGTTCTTATACCTCAGGGGCAAATTACTGTGAGTTTAAGTTATTTATGAGTGAATGTTTGTGACAAACCTCGTCTTTGCACCTCCAGCATCTCATGCAACACTTTCTGTATTAACGGTTATTCTGTCTTCACTGTGAGCTTTTTGGCTCAAAATCAATTTGGTTATTCAACATGCAGGCAACATCTATACattaaaggaacagtttgacattttggggaatCTGCTATTTGTTTCggtgctgagagttagatgggAAGATCAACCACTCTGCTGGAGCTAGCAGTCGCTTTTGCTTAGTATACTActaaggggaaacagctagcctggtccgtccaaaagtaaaaaaaaaaaaatgcacctaccagcacctctaaatcccactaattaacatgttatatgttgtttgtttaattcgTACAAAAATCAAagtgtaaaaactaaaaaaaaaaaattctaggGGGTTATGTGCCAGAATGTTTCTGGATGGGGCGCAGTGACTTGCTGGAGCCTTGAGTTGGCATCTATCACATGTAATTCTTGCCAAGAAAGCGTAAATAAGTTTTTCCCAAAACATTAAACTATTCATTTAAGCTTCAAAAGATCTTATAATTGTATGCAAAGATTTAGTAAATGGTGTTTTAATGGCTGCAAGGCAGAAAGATGGAGTAATAAGAAAAAGGTTTTATAGGTTTTACCATAGAAAGTGCTATTGTGAGAGTAGGGTAGTCTTAAGTCTTTCATTATGTGTCAGTTGTGACAACCAATGCaaaaatctgtgtgtgtttttaaatgatgtGTGTGCTTTAAGATGTGTCCAGGTTTAACAAAACCTCAGTCCATTCTTTGTTTGCAGTTTCTCTCAATAAGGTCTTGCCTCACCCGGCAGCTTTTGTCATTTTGAATCATTGTTCAATTGTTATTATCTTACGTATTAGAAGGATGAGCACAAATCGTGGAAAATATGGCTTGAATTACTAATAGATGCACCTCTTGTCACTTTGATCGCTGCATTATCCATCGAGCAACCGAGCACTTTTTAaactccatctctctgtctgttttcttAAAATCGTAGCATCTGCTACAGGAGAGAGATGGTGCAATGTGATCCAGTGTTTAGTTATCAAACTGTATagaaaaaatgtttattttatgtattgtcTTAATTTATCTTGCAaaagctgataaaaaaaaaaacaataaaggcATCAAATGTTCTTTAA

Function

GO: NA

KEGG:

id description
K17795 TIM17; mitochondrial import inner membrane translocase subunit TIM17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 106781 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 113220 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 117029 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 118443 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 120697 12371821 ~ 12373308 (-) True G49178
TU65777 lncRNA upstream 105415 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 160583 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 160987 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 200964 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 269355 12768820 ~ 12771419 (-) True G49372
XM_039802010.1 mRNA downstream 238 12468700 ~ 12493767 (-) False LOC120559913
XM_039802009.1 mRNA downstream 238 12468700 ~ 12493767 (-) True LOC120559913
XM_039802011.1 mRNA downstream 26002 12452487 ~ 12468003 (-) True sypb
XM_039802007.1 mRNA downstream 44337 12440017 ~ 12449668 (-) True plp2
XM_039802008.1 mRNA downstream 54096 12415603 ~ 12439909 (-) True prickle3
XM_039800029.1 mRNA upstream 4936 12504401 ~ 12511572 (-) False gpkow
XM_039800028.1 mRNA upstream 4936 12504401 ~ 12511572 (-) True gpkow
XM_039800100.1 mRNA upstream 115476 12614941 ~ 12635550 (-) False LOC120558830
XM_039800098.1 mRNA upstream 115476 12614941 ~ 12635550 (-) True LOC120558830
XM_039799439.1 mRNA upstream 174922 12674387 ~ 12679665 (-) True LOC120558433
TU65695 other downstream 55280 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 102334 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 271003 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 324796 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 365580 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 752947 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1640915 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2032659 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2345873 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2345873 14845338 ~ 14853817 (-) False G49845

Expression Profile