RNA id: XM_039800420.1


Basic Information

Item Value
RNA id XM_039800420.1
length 2602
RNA type mRNA
GC content 0.46
exon number 13
gene id mfsd2al2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12392255 ~ 12410148 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAATAGACAACAGAAATATTTCCCTCCACCTTCCTGTCTGCTCTTCACAGGGGTCGGGGGGGATTCCTCTGGCCAGGAAGGTGTGTTATGCTGTGGGTGAGGTCCCCTATCAGATTACCACAGCAGCCATAAATGTTTCCCTGCAGATTTTTCTTCTGGATGTTGTACAGATGGAGGCCTCCTATGTCTCCATGATTCTATTTGTGAGTCGGGCCTGGGATGCTGTGACCGACCCTCTGGTTGGATATCTGGTGAGCTGCAGTAACTGGACCCCCATCGGCAAACTCACTCcatgGATGATTCTCTCCACTCCATTTGGTATCCTGTTCTATCTGCTGCTGTGGTTCGTGCCACAAGGACCAACGTCTCAGGGTCTCAGTGTGCTGTGGTTTCTCACAGCAGGCTGCCTGTTCGAGACCCTCATGAGTTGCTACAACGTTCCTTACCTCTCACTCAACATGTTCCTGGGGGGAGATCCCAGAGACAGAGACTCTGCCACGGCCTACAGAATGAGTGTGAAGATGATGGCCATGCTGTTGGCTTCTGTAATGCAGGGTCAAGTTGTAGCTGTgtacaacacagaaaaacaagagGCCTGTCAACATCTGGACCAGGCTAATGAAACAACAGCTCAAAGCACATCTTCACCACAAACTGTGCCACTACAGGAAACGAAAAAGGCTTTCCTGACCTCAGCTCTGATCATGGGGGCCTTGTTTTTCCTCTGCAGCCTGGTTCTCTTCCTGGGGGTGAAGGAACAGCGGGcccCTCTCTGCTCTGATGACAAAGTGCGGCCGCCCTATCTGACCTCTCTGAAGATGCTGATATGTCACATTCCCTACCAACGACTGGTGCTTGGCTTTGTCTTTAGTGTACTTGCATTTCAGATGTCCTTGGGTAATTTTGCACTTTTCTGCAGCCATGCAGCTGGGCTGGGAGATCAGTTCCAGCACCTCCTACTGGTTTTACTGGTGTCTGCCTCAGTAGCGGTCCCTCTGTGGCAAACGGTTCTTCTGAGAATAGGAAAAAAGGCCACAGTTCTCTTCGGGCTATCGCTCTTCATCCCAGCAGTGATTATAATTGCCTGTGTTCCCAGTAACCTCCCAGTCTTCATGATTATGTGCGTTCTGATGGGATTCAGCGTGGCAACCATATTCATGCTACCCTGGTCTATGCTCCCAGATGTGGTGGACGACTTTGCCGCGAGACATCCCTCCTGCAAAGACCTGGAGCCCCTGTTTTTCTCCTGTTATGCCTTCTGCAGTAAGCTGGCAGGAGGCCTGTCTGTTGGCATCTCAACCATGACATTACAGTTTGTGGGCTACAGACCGGGTGCATGTAACCAGGGCGACGAAGTGGTGACGGCTCTGATTGTGCTGTTCTCACCAGTCCCCATCGCACTTCTGCTGATAGGGATGGTCTTTTTTCGCTCCTATCCGATCAATGAGAGGCAATGTTTTCAGCTCCAGGAACACATGACCACAGTACACCAAGAAGCTACATCATCCTCATCAGACCCAAGAGAAAACGCAGAGCAGCCAACAGTTCTGCAGCAGTCCAATGCTGGTGCGACATCAACTTCACATTCTAACACAAAGACCAACACATTGTACAAGTCAACTTCCTCGCCATGTTGTTACAGTCATGATAAAACATGCTCAGTCAAGGCATCTGTCCGTTCAAATGTAGCAAAGAGCCCCTCTGGAGAATACAGCAGGCCAAAATCAGTCGTCCAGTCAAATGTAAATCCTCAGTGTCATAAACAGAGAATCAGCTCACAACAGCACTCAGGAGAAGATAAACCGGGTGGATTTTTTTCTGAGAATGATCCTGGGCCTTTACCTCGCAGGTCACATGTGAGATCCAAAATGTCATGGGTATAGCCAGATACCTTAAAGCGATAGTTTGACATCTTGGGAGAAATGCTTTACTTTCTTgcctaaatatgaagctgcagTCAGTTGGCTAGCTGTGTCCTCCTGCTGCCAGTAttgatgctaagctaagctaactgcctGCTTCCTCTAACTTCATATTCAGTGTACGGACATGACAGGggtatcaatcttttcatctaaTGCTCGATATGAAAGCaaattatttcccaaaatgttgaactatttctttaaatagTCACATACAGTGTAATACCGGATTTAGGATCATATTTTTAACACTCAAGTGAATATGGTGAAGAAAACACTGATTTTGACTGTATTCTTGCTGTCATAAAAGGTCCTGTCAATAATTTTCATGAATACTCCCTTCAGTATTTTGAGGCTGCTTTTGTAAAATACATCACATATGTCTTGACAGTCTTCCTCTTTCAATTGTTCTGCTTGATttttgatttgtatttgttttttcaacaatgttgtctaaaatgtttattttagagAGGAGGCTTTTGCTGTCCCTATGATTTGTGACTTTTTGGAAGTTAGCTTCTTAATTGTAAGTAGCCGAAGCTTGTAGTCAAAGTTTGGAACACATGCTTGAAAGTTGTAATTTTAACACTATGCTTGTAAATGTTCTATTTTTAAATTCACACTCCTCTGCGCCATTTCTGCACCTGTTTCGAATAAACATCTTTTGTCAGTA

Function

GO: NA

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 5031 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 11470 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 15279 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 16693 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 18947 12371821 ~ 12373308 (-) True G49178
TU65777 lncRNA upstream 194732 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 249900 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 250304 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 290281 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 358672 12768820 ~ 12771419 (-) True G49372
XM_039799419.1 mRNA downstream 578 12389003 ~ 12391677 (-) False fkbp1aa
XM_039799418.1 mRNA downstream 60263 12323485 ~ 12331992 (-) True samd10a
XM_039799415.1 mRNA downstream 68914 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 72429 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 72429 12306258 ~ 12319826 (-) True uckl1a
XM_039801994.1 mRNA upstream 2073 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 2073 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 2073 12412221 ~ 12415046 (-) True fam110a
XM_039802008.1 mRNA upstream 5455 12415603 ~ 12439909 (-) True prickle3
XM_039802007.1 mRNA upstream 29869 12440017 ~ 12449668 (-) True plp2
TU65659 other downstream 584 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 169253 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 223046 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 263830 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 263830 12126886 ~ 12128425 (-) True G49083
TU65695 other upstream 9638 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 842264 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1730232 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2121976 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2435190 14845338 ~ 14853817 (-) False G49845

Expression Profile