RNA id: XM_039801049.1


Basic Information

Item Value
RNA id XM_039801049.1
length 3862
RNA type mRNA
GC content 0.46
exon number 8
gene id ikzf4
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21281957 ~ 21291146 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCTGTTGTACAATTATTCGGTCTGTATCCCAGCATGGGCCCGGAAGTTGTTTCCCGGAGATGCTGTCGTCGCCTGGGAAAACAAACAGCTATCCAgacaattaaaaaggaaaacaccGATCGGTCGCCAGGTAAGGAGGAGGCTTGTGGACTTCACCGCGGCGCCTGGCATCTGGTGAGAGAATGAATGCTGAGGATTGCAATGGACGCTCAAATGCACAAGGTAATGGAGGAGAGTCATCAATGGAACAGGATTTTTATGGCGGGTTGCAGGGCCCTTCAGCAAGATCTCCAAACAGTCAGCAGTCCTCACCACACCGCTCCCATAGTGGTCAGTTATTATTCCTTCGCTCCCATAGTGCAAACTCCATCAAGGTTGAGCTGTGCAGCGATGAGGAGTCCCCAGGTGCTCCACGGCCAGAGATCAGAGAGGCTGTGAGGGACGATAGCAGGAGGGATGACAGAGGGGACCCCATGGAAGAAGGGAGTGCAGAGTACGCtggaagagacagagggagcaTTTACAATGAGATGGCCAGTCCAAATGCTAATTCACCAGGACCTATCCGGCTGCCCAATGGGAAGCTTCAGTGTGAGGTGTGCGGGATGATCTGCATCGGACCCAACGTGCTGATGGTGCACAAGCGTAGCCACACAGGCGAGAGGCCGTTCCAGTGTAACCAGTGTGGAGCTTCCTTCACCCAGAAGGGGAACTTGTTGCGCCACATCAAGTTGCATTCGGGAGAGAAGCCTTTTAAATGTCCCGTTTGCAGCTATGCTTGTCGCCGGAGAGATGCCCTGGCTGGACatctacgcacacacacagGTGCAGCTTCTTCTCCAACAGTGGGAAAACCTTTTAAGTGCAGCTACTGTAGTCGCAGCTACAAACAACAGAGCACACTGGAGGAGCATCTAGAGCGCTGCCATAGTTATCTGAAGAGTCTGGACCACCAGACAGCAGTGAATGCAGCACAGGGTGAAGAGTCAGGAACTATGGAGACAATTGCTAAACCTGTGCTCCAGCCATCCAAGGAAAAAATCCAGTTTGTGGATAGACTGGCTATTAGCATTACCAAACGCAAAAGGTCAACGCCACAGAAGTTTTTggGTGTAAAGCATATGCACCTCGACCTACCAGAAGCACCTTACGAATTGTCTTCTGGCTCTGAGAAGGAGGGGGACATTATGATCTCTCAGCCCGCTGGGGACTCTGCTGGGTTGGCTGGTCCACATCTCCAAGGCGGCAGGGGTAGAGGGGAGAACCATGAGCCGCCTGCACTGTCTCAGCTCCATCCTGCCTTCCTCTCAGAGCTACGCACGGTTATAGGCACCATCAACAGCAATGTGACTCCTCAGGGCCCCCGAGCACATTGTGGAGGTGGGATGGCAGCAGTGACTCTTGGCCTGGCTGGGCGGGAGGCAGGTGAAGGCCGGGATGACCAACCCTCAGCCCATAGCCACACCACCTCACCCAACGGCTGCCCTGACtctacagacacagagagcaCAGCAGAAGAGCAGAGCACACGGGCTACAGCCCCAACAAGTACCTCTAACAACCACCACCTCCACTACCAAACCCCAGCACTGCCCTGCAGCCATCCCACTTCCAGCCTCAGGCAGGTCAAAGACTTGGACCCAGAGTGGGAGAGAGCATGTCCTGCGCCCCCCACAATAGCAAAGAAGAGCCCTGTCTTACCCCTTTCTTCCAGGGAGACTGTGCAGGTGTTAGACAGGGATGGTCGGCCTGTGCGCTCCTTCCACTGCCGGCACTGTCGCATCCTCTTCCTGGACCATGTCATGTTCACCATCCACATGGGTTGCCACGGCTTCCTCCAACCCTTCGAGTGCAACATCTGTGGCCACCGCAGCCAGGACCGCTACGAGTTCTTGTCTCACATCAGCCGCGGAGAGCATCAGGTGGGCTGAGGAGAAGGGATAGTGGTCGGATGAGGAGAGGTGACTGCTGCTCTCTAAAGTTGTAGGCTCCCGTTTGTTCTGCACCAGATCAGTTACTTTAAATCCctgtaagtaagtaagaaaAAATAGTTGTGGTTTTACTGTGAGAATATTTATTAAACTAAATCAGACGCGATTGAAAAATCTTTTTACCGCAGCATTTAAAGTTCAGTGGAGgcaaattacattttatgaTTGATTGCACTCCCATATCAAATCATCTGGCAAAACTACAGGTTTTGCTTCAAAAGTGCCTTCTTTGGGGATTTTTTCTTAACTAAAAAGAAATGGGGGGAACTGGTGCTCAAAAATCTTGACTAGCCATCTTTGCTAAGTGATTTAGTTAGTACTTTTGAGAGGTCATGTGCAAAGGCAGTAAAGGAAAGCATGGTATGTACATTTTAAGATTTCTATTTGGTATGCTTAGTATGCACTGAGAGCTTTGTTTTTGGGGTAGAGGAGGGTACTTTGGGTCGTGTGTCAGGTAAGCTTAATATGCACTGAGAGCTTTGTGCCTCTGGGTTTGGGAGGAGCTTTTGTCACAGACGAAGCACAGAAATGGATTGCCTTAACTCTTACAGTAGTACGCTGCTGTAGGAAAACATTGTTTACAGCATGTGTAATGTGACCTCAGAAGAGAGAATATTTGCAGCTGCACAGCAAGACTATCAGAACAAAGCGATATGATGAGAGAAATTAACTTAAACATTCAGGGCCTTCAGGGCTCAGATGTAAAATAGTTTTTTGGATTTTAAAGTGAGCCTTCGAATACTGGTGCAGATCAGACCATGAGCCATGTAGTGTACAGTAAGAGACTGACTGAGATGGCCCAGGGTGCTATACCTAAACAGGATTGCACTTTTAGGTTCCCTGCTTATAAATGAACATTTTTGCCGAAGCACTTGATGgctttacaatttttttttctgcgaTTGTTCTACTGCACTGATAAATCACATAATACTCACAATAATTGATTATCTAATTTGCAACACCAGTGCATTTTTAACGGAGCCGGCCTTCTACAGAATCTCACAGTGTTGCACTGGTCCTGCGGTCTACACTGAAGTTTGCTGCAATGTGTGACTGAGAAATTAAATATCAGTTCAACTACAACAATTTGTTGTGGTTTTGTACTCAGCAGTTGAGGCTGAGATTTTAAACTATTTGCATAATGTAAGTGAATTGACAAATTCATTATTTAAACATTAATTAACAAATCAGTTTGGATCTGTTAAGTTATCACTTGTGGTTATCTATTTAGTGTTGTTTGTTTCAGCCTTGGTGTATTTAATCAGCTATATTCCAAATCTTATCCAGCATATTCCTCAAGTCCATAAAATGTTACCTCCTGCTTCTTTATAGCACCCAAATACCTTATTGCTACAGTATGGTGAGTTATCTGATAATGTTAATATTGGGAACAGATGAGACCAAACTCAGTATTCTTACTTGTTATTGTGGGTTTGCTGCTTCATAGTTTAACTTAATTTCCTTTGATCGCAGGCAAAACTATACTTGAaactgtttgagaaaaaaagtaatttaggaATGCACTTGGTTTGATTagagaaatgtgtgtgaatggaatATAGCATGTGTGCTTGTCATTTTCTGCTTTTCCCTGAATTGTGAATTCTTTTTGAAATGTGAAGTAATTTCAAGAAGTGAAAATGAGGCATGGTTTTTGTCTCCTTGTGTGAACTTTTCAATGTTATACGATATTTTGTGAATGATGTAACATGACAAAACACTTTACCTCAAAGTTAAAGATGTACAACTGCCTCATTATTTCAACAAGTCATGTTGCTTTCCAAGATGTTCTTGCAGTTACAAATGCGTGCCCCTCGATATTCTCAAAACTTTTTACTGTCAATAAAGCTGAGTTTATTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639239.1 lncRNA downstream 59325 21219967 ~ 21222632 (-) True LOC120559347
TU69044 lncRNA downstream 59381 21221769 ~ 21222576 (-) False LOC120559347
TU69042 lncRNA downstream 82108 21199340 ~ 21199849 (-) False esyt1a
TU69031 lncRNA downstream 114209 21166722 ~ 21167748 (-) True G51673
TU68958 lncRNA downstream 233171 21046049 ~ 21048786 (-) True G51606
TU69100 lncRNA upstream 486 21291146 ~ 21293845 (-) True G51721
TU69153 lncRNA upstream 103782 21394442 ~ 21395700 (-) True G51767
TU69226 lncRNA upstream 207484 21498144 ~ 21503262 (-) True G51834
TU69232 lncRNA upstream 222343 21513003 ~ 21515352 (-) False LOC120559689
TU69233 lncRNA upstream 222343 21513003 ~ 21515352 (-) False LOC120559689
XM_039801056.1 mRNA downstream 4222 21258261 ~ 21277735 (-) False wnt10b
XM_039801065.1 mRNA upstream 601 21291261 ~ 21295137 (-) True dnajc22
XM_039801193.1 mRNA upstream 72640 21363300 ~ 21376234 (-) True acvr1ba
XM_039801579.1 mRNA upstream 88707 21379367 ~ 21392760 (-) True acvrl1
XM_039799244.1 mRNA upstream 105560 21396220 ~ 21403008 (-) True ankrd33aa
XM_039799243.1 mRNA upstream 105560 21396220 ~ 21403007 (-) False ankrd33aa
XR_005639338.1 other downstream 82914 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 329439 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 329439 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 329948 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 683041 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 932489 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1238946 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1923438 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1923438 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile