RNA id: XM_039801056.1


Basic Information

Item Value
RNA id XM_039801056.1
length 4273
RNA type mRNA
GC content 0.44
exon number 7
gene id wnt10b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21258261 ~ 21277735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCTATGATTGCAGACATAGACAGTAGCCTGTATAAGATTGCAACCACCACCAACTGGTATGGAGTGAAAGATCCGCTCAACCAAGTATTTCAATTAGGACAACTATATgatcagattttattttttttatactacGCTCTGAGTGACTATATTTTAAGCTAATCAGTAATGAGATTGAATCTGAGTAAGGTCCTGCTACATGTATAGCTAGCTATGTAGTTTGTGTTAGTTAACAACGTTACCTGCTAACATCCAGAATCGAAGAACCAAGATTTGATGCTCTCTGTTTTAAAACAGCTTAAGTGCACACGTTAAGAAAAACTGAGAACTTATTTAACAATCACTAAATTAAGCTGGAAGCTAATATAGGCTactgtgaaaacaaaaaagacagTACGGTCAATAGTGTGGCTTAGTTTAGTTCTGTTattctgtttctgtatttagGTCCAGTTGTACCTAGCTTTTAGTCTTTTTTAAGTTGAGATTGCTCTGCTAATTTAACAATTCTACTGGGGAAATTGTAGTCTCGGCCTTATGTTCAGAATTGAATTCAGGAAATATTTTTAGTCAAtccaaattataaataaaaaagtgttcACTGATATGCTACAGGATTTTAAGAAAGGTAATATTGCCTACCTTTCAgttaagtttttatttatgtattattagtattttatttttgcttccgtttttattttaattattcttttttatatgttgctgtaggcctacatttatgTCCTGATAAGAATATACCGCCTTAATGAGAGTGAAGACAGAACTTGTTATATCTTAGTATGATGCCGAACTGTTTTtatgctgtttaaaaaaaagttaatggaaaaaaaacgcTCCATTGTCCTGAGTAGGAACCGAACTGattcaggtaacgttaaccGTTCTTTAGTGTTATCATCTGCTtattttagctagctagctagctaagaaAACATTAGCAATTTGTCTTCCTTTGTAGCCTATGTGTTTGctttatactttatttatcGTAACAGGTGGGTTGATATTGCATTACACATATCCagaagtttgttttgtttgaataaGCCAATTTAAAGTTTGTAATTCGACACTAATTCCACTAGATGGCAGCCGTTAATAATCAGCAAAGCTTGACACTGACTTGGTTTGCTACAAACTATCATTGGTGATGATGAAACTATGATGCACAGTagctaaaaacacacaaaagactGCCACACAAGGCCACATATGTGTTTAGCTTATCTACTGCAGATACTTGTTTCCTCACACTTGACATGAAGGTTAATTTCGTGACTACTGGGATTTGGGTGATTTTGTAACATTTGATGTCTGTTTATAAAACCTGAAAGTTGTTCATTTTGAAATGTGGACTTAAACTCCCTTGGGTGTGAGGAAAGTTGTATGGGCTCATCAGTTAGCATTATTGTCTTGAAGATGTTGGGTTTACCAGCTGGGCTAACTGAGGTGTGTTCGTGTGGGGCACTCTTTCCTCGAAACAAACTTATAAACAGATAGAATAGGTCAAAAGCACAGGTTGAATTTCCCCCAGTGGATAAGTAATCTCATATCCTTATCATTTCTATTCCTGGGGAGCATGTCAGGTTCTGTACAACCTTGAAGATGAAGGCGAAGAAGGAAGGTTCTTCAGTCCACTATAAACAAGGAAGGAGATCCTTAAAGAAATCTCCAGACTCCTGCAGTGCAAAAGCAGGGTCCAGAAGGAACGTTTTAGGGTGCAAAATGTACTGAAAGGCTGCTGGCACAGTTTGTAGGACAGCTCTGGCTCTGGAAGCGATTAGCCCTCAAAGCTTGGGCTTTGACTGCCAGATGCAGGGGATAATGGATAAAACTGCAGAAGGAAAGATGGAGAGGTGTGTGCAGCCAGCCACACAGACATGCAAGTTGTGGCAGGCCAGTAGATGATGAAGCGATGGAGATGTTAGGAGGCCATGGCCATTGTGATGCTGGGTGGCTGTTACTCTGGAACTGCCATCTGCCGAAAAGGTCAGTTGCTAGGGGACGATTCTCCTGGACCGTGTCTGCCTCCCAGCTGCCatccacacacccacacgcacTGGCTTGGggtGCTGTGTAATGATATCCTCAGCCTGAAGGTGGCAGGAGATCCAGTGCTAACCCCTAACTCAGTGTGCCTGAGGTTGGCAGGCCTCAGTAAACGTCAGATGCGGATGTGTGTGCGGAGCCCCGATGTGACGGCCTCCGCTCTGCAGGGCATCCAGGTGGCCATTCACGAATGCCAGCACCAGCTCCGGGACCAGCGCTGGAACTGCTCCTCACTGGAGGGCCTTGGCAAGCTTCCCCACCACAACACCATCCTCAACAGGGGTTTTCGCGAGAGTGCCCTCTCTCTGGCCTTGTTGGCAGCGGGTGTGGCTCACTCTGTGGCCTCGGCCTGCAGCATGGGCAAGCTGCGGGGGTGTGGCTGCGAGGCCAAGCGTCGCCAGGACGATGACAAGATCCGGCTGAAACTCACacagctgcagctgcagaccCTGCAGAAGGGTGGAGTAGGCCTCAGCATGACACGGTCATTACCCTCAGAGCTAAACGGTCACCATGGCGACCTGCCCGCTAGCCTGCGCTCTACCCACCCCTCCGCCCCGCTCAAGCCTTTACCAGATGAGCTTAGCTCCATGCAGGAGACATGGGAGTGGGGGGGCTGCAGTCATGACGTCCGCTTTGGGGACCGTTTTTCCAGGGACTGGCTGGACTCCCGCGGGTCTCCAAGAGACATCCACGCTCGCATGAGGATACACAACAACCGGGTGGGACGACAAATAGTGACTGACAACATGAAGAGGAAGTGCAAGTGTCATGGCACATCAGGGAGCTGTCAGTTTAAGACCTGCTGGCATGTGTCTCCAGAGTTCAGGGTTGTGGGTTCTCTACTCAAGGAAAAGTTCCTGTCAGCCATCTTTGTCAACTCTCAGAACAAGAACAATGGGGTTTTCAACCCTCGAACGGGAAACGGCGCCAGCGGGAGCACAGGGGGACTCAATGGAGGCCGCCGTCGAACCATGTCCAGAGAGCTGGTGTACTTTGAGAAGTCTCCTGATTTCTGTGAGCGTGATGCGTCCGTAGACTCTCCGGGTACACAAGGACGCATCTGCAACAAAACCAGCTACAGCACAGACAGCTGCGGCTCGCTGTGCTGCGGCCGTGGACACAACATCCTGAAACAGACACGCAGCGAGCGCTGCAATTGCAGGTTCCACTGGTGTTGCTACGTGCTGTGCGAGGAGTGTCGTCTCACAGAGTGGGTCAATGTGTGCAAGTAGATTCCAGTTCTCCCAGTCCCAGCTGCCTTTACCCATCCAGAACTCAGGATGGCGAGCCTGTCCCTTCGCCCACTCCTTTTGTCCGAGCGTTTGTTTTGCTCCTTGTGTAACTGTCCCAAAAATCGGTTTATAcccccctttccttttttttggtcCATCATCTGGGATCTATTTTCTCTTTGTAGCCACTGTTATTCTCAAAATGCCAAGTCAGAGATTGAAGAGGTGACTCATGTCATTTGTCTTGCCATGGTCTGTTTAGACCATGCCCTCTCAGCCATGAAAAAAGCCTATACCCAATCTTTTCTAtcccacaaaaaaaagaagagtaaCAGCAGAGAAGCATTTCTATTTCAATGTCTACATGCTGACTCATCTCATTGTACAGTAGTTCTGCTTTTTAATGTGTTCATGTATatttgtaaatgtattattattaatattattattgtgttggAGCCTGTCTCTTTGGTTCTAGTTACTGACAGACTTGTGCTGTTAGACAACAAAGTCTTAGCGCAATTTATCTCACATTCAACTGGGCTCTTCTAATGATCTCCAAGATATTTTCTCAATTTGTATATTTTGCACCTGTGACTCGGACAGAGCAACAGTACTTATTTTGGGGTCGGTCACAAAATCTTGGGTTTTACTAATAGAAGAAGACAAGATAAGggacagtgtttttttgtggtaTATGAAGGACTGATATATCAGGATAGAAAGCACATAAGCTTATTAAACTTGTATAGTTGTAAAACTCAAGATGGGAAagttttggagacaaaataagTCTTTGAATTTCTTACGCTGAACAACTAATCATTCAGATTTATTTAAACCATTGTAACAATACTAATTTCATGGGAGTGGTCACTAGTGGTGATGTGTTTCATGAATATAactgtgatgtgatgtgatgtgtgtcACCTTTCCTATGAAATCATGACTCAACTCTTTTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639239.1 lncRNA downstream 35629 21219967 ~ 21222632 (-) True LOC120559347
TU69044 lncRNA downstream 35685 21221769 ~ 21222576 (-) False LOC120559347
TU69042 lncRNA downstream 58412 21199340 ~ 21199849 (-) False esyt1a
TU69031 lncRNA downstream 90513 21166722 ~ 21167748 (-) True G51673
TU68958 lncRNA downstream 209475 21046049 ~ 21048786 (-) True G51606
TU69100 lncRNA upstream 13411 21291146 ~ 21293845 (-) True G51721
TU69153 lncRNA upstream 116707 21394442 ~ 21395700 (-) True G51767
TU69226 lncRNA upstream 220409 21498144 ~ 21503262 (-) True G51834
TU69232 lncRNA upstream 235268 21513003 ~ 21515352 (-) False LOC120559689
TU69233 lncRNA upstream 235268 21513003 ~ 21515352 (-) False LOC120559689
XM_039801067.1 mRNA downstream 2797 21250701 ~ 21255464 (-) False arf3a
XM_039801066.1 mRNA downstream 2797 21250701 ~ 21255464 (-) True arf3a
XM_039801041.1 mRNA downstream 10104 21234266 ~ 21248157 (-) True erbb3b
XM_039801040.1 mRNA downstream 24832 21224079 ~ 21233429 (-) True pa2g4b
XM_039800997.1 mRNA downstream 41542 21199340 ~ 21216719 (-) True esyt1a
XM_039801045.1 mRNA upstream 4222 21281957 ~ 21291146 (-) False ikzf4
XM_039801044.1 mRNA upstream 4222 21281957 ~ 21291146 (-) False ikzf4
XM_039801043.1 mRNA upstream 4222 21281957 ~ 21291146 (-) False ikzf4
XM_039801042.1 mRNA upstream 4222 21281957 ~ 21291146 (-) False ikzf4
XM_039801049.1 mRNA upstream 4222 21281957 ~ 21290660 (-) False ikzf4
XR_005639338.1 other downstream 59218 21167971 ~ 21199043 (-) True fmnl3
XR_005639109.1 other downstream 305743 20920699 ~ 20952518 (-) False LOC120558386
XR_005639107.1 other downstream 305743 20920699 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other downstream 306252 20883938 ~ 20952009 (-) False LOC120558386
XR_005639356.1 other upstream 695966 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 945414 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1251871 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 1936363 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other upstream 1936363 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile