RNA id: XM_039801466.1


Basic Information

Item Value
RNA id XM_039801466.1
length 5831
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC120559618
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16823774 ~ 16916382 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATCCACAGTGCAGGAGCAAATAAAATGAACTTGTCGCGTTACCTGCTTAAAGGCGCCGCCGGTTGTGTGAACAGCCCACCTGCTCACGGGATAAGTGAATGGTTCCTTATGGAAAGTTTAAACAAGGAGAAAAACTAGAAGATTAATGAGGACAAGAGTCTTTGAATGTAAAGCTGGCAATAAGAGAGCGGATTATATCCCATAGCGAGGAATCCGAGCGCGTGTTGTTGTCAAACGATGCGGAAACAACAACCGAAGCTACAACAAACTGGATTTTGATATTTACACGCGCTGGGAGCAGCATGTCTTGGCTCAGGAGAAGGGTGAAAATGTTGCAACTTGGAGTGACACCCAAACACCCTGAAGTTTTCTGCATGATGGGACTATTTATGTGCTATGCATCGGCTGGTTTTAACACCATTCCGCGGAACTAACGGGTTAAGTTGCGACCTGAGTCATCATGTCAAAAGTCATTCAGAAGAAGAACAACTGGATCACCAAAGTGAACGACTGCCTGGTTATCCGGGGCGCGTCCGGGGAGCTGAATGTGGATCTGCGCGGCGGAGCTGAGAATGGAGAGTTTCCGTATATCGGGCAAGTTAGGGAGGATGCTGTGGTTTACCAGGACGGTAAACTCTGCGAAGGGGAGCTGCTCCTGGCGGTCGAAGGGGTGCCTGTGTCTGGATTACCCCTCTATGacattttaactgtgattaagTGCTGCAAAGGTCCCGTCAAGTTGAAAACTGTGCGCCAAGGTCACAAGCTCAACAAGGACCTGAAGCACTACCTGAGCCTGAGGTTTCAGAAGTCTTCCCCCGACCACGAGCTGCAGAAGACCATCCGAGCCAATCTGTATCGCCATGCTGTGCCTTGTACGACCCGCCCCCCTCGAGACGGAGAGGTCCCAGGGGTGGATTACAACTTCCTGTCTGTGGAGGACTTCCTAGAACTTGAAGATAGTGGCACACTACTGGAAATAGGAACATATGACGGTAACTATTATGGGACCCCCAAGCCGCCAAGGCAGCCCATCGGTGGTACAGTGATTCTCAGTGATGCAGGCTCCCAGCAGTCCACCCCAAAGCGCACCAAGTCCTACAATGACATGCAAAACGCCCGAGTAGTGCCTGCTGACGATGACGATGACGACCAGGCCACGGAAATGAACAACAGTTTTACAGGTAACCCTAACGACCAGGACGAGAGCCGCGGCGGCATCCTCCGGCCGTACCCCGCACGTGACAATGCTCCATCCTGTGGTCTGAACAATGCGGCCACCTCCACCACAGAAAGCGGGCAGCAGACCCTTGCAGAACCGCAGGTCTCTCCGGAAGACCCACAGGGGCCGCTGCCTGAAAACTGGGAGATGGCCTACACTGAGAGCGGAGAACTTTACTTCATAGAcaCGGCAAAGGCACACCACCAGGACATGGATGTGTATTTTCAGAGCTTCCACAACACAAAGACCACATCATGGCTGGATCCTCGGTGTAGAGACAAAGGCTCCAGGCCTCTGGAAGAGTGTGATGACGATGAAGAAGGGATACATACGGAGGACCTGGAGACTGAGCTTGAGCTGCCTCCAGGATGGGAAAGGATAGAAGACCCAGTGTACGGGGTGTACTATGTAGATCATATAAACAGGAAGACCCAGTATGAGAACCCAATGGTGGAGGCGCGGCGTCGGAAAAtcctggagcagcagcagccgcagccTCCAGAAGGTGAGCGGTATATTCGAGAGTGGATAGAGGAGCACTCATCAGCAGCGGCTCCATTAGCAAACTACGCTCCAAACCACCTGGAGACCTACAGGGACCCGCAGGTCCCACCAACTCTACCTCCCATGCCTGCAGGAGCCAAACGAGGGAAGCCTTTTTTCACAAGGAACCCAGCAGAGCTGAAAGGAACCTTTATCAACACAAAGCTGAAGAAGAGTCGTCGCGGCTTCGGCTTCACTGTGGTCGGAGGTGACGAGCCAGATGAGTTTCTACAGATCAAAAGTCTGGTGCTGGACGGGCCTGCAGCCGTGGATGGCAAGATGGAGACAGGTGATGTGATAGTCAGTGTGAATGACACCATTGTGCTGGGCTACACCCACGCTCAGGTGGTGAAGATCTTCCAATCCATCCCCATTGGTTCCATGGTGGACCTGGCCTTATGCCGTGGCTACCCGCTGCCCTTTGACCCTGATGACCCAAACACCAGCCTGGTGACCTCAGTGGCGATCTTAGACAAGGAGCCTATCATCGTCAACGGACAGGAGGCGTTTGACTCGCCTTCCAACCAGGCTGGTTCCGTTAATGGCATGAGGGAGCTGCGGCCGCACAGCCCCTCGGCGGAGGTGGCGTCTAACGGCTCGCACGGCTACTCCAGTGATGTGGTCACACTGGCCTCATCCATAGCCACCCAGCCGGAGCTGATCACCATCCACATGGAGAAGGGCGACAAGGGATTCGGCTTCACAATTGCCGACAGCCTGACTGGAGGAGGGCAGAGGGTCAAGCAGATAGTGGACTACCCGCGCTGCCGTGGCCTAAAGGAGGGGGATATTCTGATGGAGGTCAACAAGAGAAATGTGCAGAATATGAGCCACAATCAGGTGGTGGACCTGCTGAGCAAATGTCCCCGAGGCAGTGAGGTCACAATGCTGGTGCAAAGAGGAGTGGTGCCAGCCAAGAGGAGTCCAAAGCTGATGcaccagttagagaggaaagacagccagagcagctcccagcaCAGTGTTTGCAGCCATCGCAGCACCCACACTGATTCTCCCAGCCACCCACCCTCTGCCATGCCCAGCGAGGCTGTGGCTCCCACTCCTGCTGCCCCCACCCAGCCTCTGCCAGGCCTGCCCCCTCAGGACCCTGCAGATGGCACCCTCACCCTCCAGAAGAAGCCAGACCCCTTTAAGATCTGGGCACAGTCCAGAAGCATGTACGAGAGCCGACTGCCAGATTGCCAGGAGCAGGACATTTTCCTTTGGCGAAAGGATACAGGCTTCGGCTTCCGTATACTGGGAGGAAATGAGCCCGGGGAGCCTATCTACATAGGGCACATAGTGAAGTATGGGGCAGCAGATGAAGATGGACGCCTGCGGTCGGGTGATGAGCTCATCTGCGTGGACGGCACGGCGGTGGTGGGCAAGTCTCACCAGCTGGTGGTGCAGCTGATGCAGCAGGCAGCCAAACAGGGCCATGTCAACCTCACTGTCAGACGCAAGTCCCCTGGATACGGAGTGTCAAAGGGGGAAGGTGATGTTCCCCCATCGCCGGCCTCCTCCCACCACAGCAGCACACAGGCACCCAGCCTGACGGAGGGCAAGCGGACCCCCCAGGGGAGCCAGAACTCTCTCAACACCGTCAGCTCTGGCAGCGGATCTACCAGCGGCATAGGCAGTGGCGGTGGAGGTGGCAGCGGGAGTGCAGTGGTGCCTGCCTCCTTGCAGCCTTACGATGTGGAGATCCAGCGTGGAGAGAACGAGGGCTTCGGTTTCGTCATTGTGTCATCTGTTTCCAGGCCTGACGCCGGCACCACCTTTGCTGGAAATGCTTGTGTGGCCATGCCCCACAAAATAGGACGCATCATCGAGGGCAGCCCGGCGGACCGCTGCGGGAAGCTGAAAGTAGGGGACCGAATATTGGCTGTTAACGGCTGCTCTATCACCAACAAGTCACACTCAGACATCGTAAACCTGATCAAGGAAGCCGGGAACACAGTCTCGCTCAGGATCATCCCAGGTGATGAATCTTCCAATGCTTCTCTGCTGACTAATGCTGAGAAGATAGCTACcatcaccaccacacacacacctcaacagACCACAGAGTCCCGGAATAACTCAAAGTCGAAAggagctcctcctcctccacccataCAAACTCAGACAACACAGGATGCTGAGTTCTACTCTGTGGACCTCGAGCGGGACAGTAAAGGTTTTGGCTTCAGCCTGAGAGGAGGACGGGAGTACAACATGGACCTGTATGTGTTAAGACTAGCAGAGGATGGGGCTGCTGTCAGAAATGGCAAGATGAGGGTGGGAGATGAGATCCTGGAGATTAATGGTGAGAGCACAAAGAACATGAAGCATTCACGTGCCATTGAACTTATCAAGAACGGTGGTCGGAGGGCGCGGCTCGTCCTCAAACGGGGAGATGGATCTGTACCTGAATATGACGGCAGCAGTGACGGGCACCCTCCCACACCCGGGGCACAAAACACTCCGGAAGTGAGAACGCTGCCACCTAACAGCCGATATCACACCTCATTGGAGTCCAGTTATCCACCAGACCTTCACAAACCATCACGCCAGGAGGAGGCTGCGTGTGGCCGAGACAGGGATAGGGCTGGGTCAGATCAGATGGACTACCAAGGCCGGCAATTTAACCCCCACCATCATCACACCTGGAATAACAATCACAGTCAAAGCAACCCCAGACAACAGTCTCCAGATAACAGTAACAGCAGTAGCAGTGGCAACAAGAAGAGTCGAGGCCGCAAAGTCAAGAAGTCTGAGTCGGAGAGCGGCATTTCTAAACTCCTAAAGACTTTGAGGAAAGACAGCTCGGGGAAAAAGGCTGCAGCTGCCGAGAAACTGAGGGGGCGAGAGCTTTCAAGCAGCAGTTCTACTTTGGACGGGAGGTTTCGTCAGCAGCGCCGTGGCTCCCTTGACCGGTCTCCAGCACTAAAGCGGGCCTCGTCTCCTGATCGCCGGCGGGCCAAGTCGATGGACCGCAGGGCAGAGCGAGCGCATCGGGACCGCACACCTGAGAGGGAGTACGATGATGGCGGGTTCCTCGCAGTCACCCCTGAGCGCAAGTTCTATGAGCGGAGGCTCCTCAAGGACTCGCAGATGGCAGGGCAAGTCAGGGAGGCCTCAACCCCTGAGCGCACCAACAACAACGGGGATTCCTTGTCTCTTTCCAGGGGCCGTACATATGATAGAGCCACAAAGAACGGCAACCTCCTGAGAGACTCTTCctcagagaggagggaggagggatatCTGATGAACGGGACACCGGAGCGACGAAACCGAGTGGAGCGGGACTCTTCCCCTGACAGCAATTACAGCCGGGACGAGCTGAACTATGCAGCAGCACCCAGACTGAAGGACTACTACGGCATGATGAAGAACAACGCTGCACACAACAATGCTGCCTACAACAACACAGGCCATAACAATAACACAGTAGGCCGCAGCCCAAACCAGCTCCCTGAGCCCAAGAGAAGGCTGTACAAAGAAAGCCCCAAAGATCTCAGCATCTAGAGCGGAGATCCCTCTCGCCACTCTCTCCTCTATCTGTGCAAACTATGTACCATACACTGGAATTGGACTTCTGAGGATACTAACTCTTGTGCTTTATTTGGTCGACCggtttattgattgatttgattgacTTAACTACTTGTGATCCCATCCAGAGATTCATAAAACAGCAGGAGTACAATCCTTCTATCAGTTCATACTGGTGGTTTTGTCattgttatagttattttgAACATAACGGAGGTTGTTGTACTATAGTAAAGGTATTGTATGTGCCTGCATATAAAATCAGTGATATTGCTTTTTGTAGGCATTGCTGAATCTAGATATTTGTTCCCCTTAGAGGTATAAAACATGCTTCCAGTTGTGGTATCTTCTAACTACTAAGCTTGtttttaacttgtttttaaatgtctgttcCATTCCTGAATTGCTTTACTGAACAAACTATAGCACAAGACACTGATGGTTCACAAGAGCTGTGACTTCAGacaaaaatctaaatttaaGATCTGATGGTAAAAGTAgataattatataaataattttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67335 lncRNA downstream 109026 16714061 ~ 16714748 (-) True G50389
TU67328 lncRNA downstream 144098 16666050 ~ 16679676 (-) True G50382
TU67324 lncRNA downstream 160729 16660998 ~ 16663045 (-) True G50378
TU67316 lncRNA downstream 242792 16580076 ~ 16580982 (-) True G50371
TU67178 lncRNA downstream 405161 16416921 ~ 16418613 (-) True G50278
TU67417 lncRNA upstream 28393 16944771 ~ 16944972 (-) True G50443
TU67455 lncRNA upstream 147440 17063818 ~ 17064746 (-) True G50476
TU67456 lncRNA upstream 148619 17064997 ~ 17065274 (-) True G50477
TU67479 lncRNA upstream 154744 17071122 ~ 17074733 (-) True G50483
TU67480 lncRNA upstream 154744 17071122 ~ 17074355 (-) False G50483
XM_039801855.1 mRNA downstream 33811 16746379 ~ 16789963 (-) True LOC120559825
XM_039801204.1 mRNA downstream 93121 16725977 ~ 16730653 (-) False LOC120559488
XM_039801201.1 mRNA downstream 93121 16725977 ~ 16730653 (-) False LOC120559488
XM_039801202.1 mRNA downstream 93121 16725977 ~ 16730653 (-) False LOC120559488
XM_039801203.1 mRNA downstream 93398 16725977 ~ 16730376 (-) True LOC120559488
XM_039800862.1 mRNA upstream 38507 16954885 ~ 16959681 (-) True fmodb
XM_039800859.1 mRNA upstream 45120 16961498 ~ 16972287 (-) True LOC120559259
XM_039800858.1 mRNA upstream 45120 16961498 ~ 16972281 (-) False LOC120559259
XM_039800860.1 mRNA upstream 45120 16961498 ~ 16972277 (-) False LOC120559259
XM_039800861.1 mRNA upstream 45894 16962272 ~ 16972293 (-) False LOC120559259
TU67071 other downstream 539918 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1969957 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1969957 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2289169 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2678552 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 771737 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 923166 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1963987 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2783395 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2784952 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile