RNA id: XM_039802011.1


Basic Information

Item Value
RNA id XM_039802011.1
length 3132
RNA type mRNA
GC content 0.42
exon number 7
gene id sypb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12452487 ~ 12468003 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACACCTCCTCGCCCAGTTCGTGACGCAGTCCAGCTCTTCCTCCTGGGCGTCTTCCTCCCCTGGGCTGTTCCGGATGAGACGCCTCCCTCCCTCCGCCCCTCTGATCCTCTTATCAGCGAGTAAGCGGCCAAGATGGATGTTGTAAACCAGTTGGTGGCCCAAGGGCAGTTCACGGTACTCAAACAACCGTTGGGATTTATCAAAATTCTACAGTGGATCTTTGCAATCTTCGCCTTCTCGACATGTGGCAGTTACTCTGGCATGTTGAAGATGAGCGTGGAGTGTAAAAACCGGTCGGAGAGTGACCTAGGCATAGAAGTAGAATTTGAATATCCGTTCAGgCTCCATCAGGTTTACTTTGATGCCCCCACCTGTAAGGGAGGGAAGCCTGAGCGTGTATTCCTGGTCGGGGACTACTCCTCCTCAGCTGAGTTCTTTGTCACCATCGGTGTCTTTACCTTCCTCTACTCTATGGCAGCCCTCTCTGTATACTGTTTCTTACTGGAGAAGTACCGTGAAAACGCCAAGGGGTGCAAGATTGACTTTGTTGTGTCAGCGGTATTTGCCTTCATGTGGCTGGTGTCCTCATGTGCTTGGGCTAAAGGCCTGTCTGATGTGAAAACAGCCACCGATCCAGAGAAGGTCATCACTTTCATCGAAGCCTGTGACGAACAAGAGAATCGCTGCCGTGAAGTCTACGACCCCAAGGTCTCCGGCCTCAACACTTCTGTGGCTTTTGGTTTCATCAACCTGATCCTGTGGATAGGAAACCTGTGGTTTGTGTTCAAGGAGACCGGCTGGATGGCTGCCTTCTCTGGAACATACGTCCCATCACAAGAAAAGCAGCCCGCCCCTGAATCCTTTGACCAGGGAGGCTATGCCCAGCAGGACCCCTACGCCGGCTCCCAGGGAGGGTACCAGCCTGAATACGGCCAGCAGGGAGGCTACACTGAGGAAGGAGGATACAGTCAGGGCTATGAGCAGCAGCCCACCTCCTACTCTAATCAAATGTGAGCCTGTCCAGTCAAACCACAGCTGCAGGATGGGTGACATTGTGATTTTGGAGTGTGGCTCTCGACCACTGCCTGCATTTCCACActcctctgtttgtctgtttgtgtatctgtgagTTGACAGGCGGAGGGAGGGAGCCATGGAGGGCAGGAACTGGTGGGGTCATGGGGAGGGGGACACCACAGGGGAAATGGGTCTTTGCTGTAACATGATGTTTATTCTCGTGATGTATTTAACTGTAGAAGACAACAGAGGATTGTCTGTTTGGTTATACGAGAAAAACTTGAATACAAATACCAAAACATTCGTTGACGAACATTTAAGAGAAATCTTGTAATGGAAAAGACTTACatttatggagaaaaaaaacaattgtagTAATATTTAACTTGGGAGAATGTATTTGTCTGTGCTGTGTAAATATCAACATGCTGATATATATGATTATATGTACACAGTTGAATAATTGTGCACTCCATAAAAGTTGTTATACAACAAATGTTGAGCACAGAGTTATTCAATTGCATTTACTTTGGTTCTGTTTAGGAGCTCACATAGTTTAGCCTTTGCCCTTCAATCCCCTTAAATTATTCATATACcataatgttttcatttattcatcTCAGAGtctataaaaaatttttttttacttttttaaatttgagaTTTATAAAAGGGGGGGCTGCTAAAAATATGATGGcaaatgttgaaagaaaaacagaattatCAATATATAAAGTGAGCAGAGTCATTTATAGTAATAACAGTGAATATGTGGTTAGCAGGTTTTTAGTATTTTGTTTCAacgttatgtttttatatatatttttccatcAAATATCACTATCAAGCGAGGATGAACTCTTCTGATACACACAACATTTTAAATCCTGACGTATAAGATCAAAAATTGCATCAGGTTAAGAAAATTAGTGAGCATGGTAGCATCTCATATTTGCTGTGCTGTTTCAGAAACCGCTGTAGTGTGCTATCAGTATGAAAATTGTGAATCGGGGCAGTGAACAACAGATTTAGcgacgtgtgtgtttgtttattgtttggATTTATGTAATGGGATCAAACTAATGTTGTCAATGAATCCTCGTCCTGTTTTGATCACCTGTTATGTGGTCCGGAAAGTTGTAAGACAGAGTCATATAGTTTTTTAACTGGTGTTTCTATTCTATCACACTGTAATCAGTGACGTACATACTCACGTTAACATTAACTGTAGGCAAATGAGAATAAAGTATATTAAAGGACTaaacacatattattattatgaggcGATCTGAACAATATGTCTCCATATATACTTCTCCTGCATCCTCAATTTCCTTCTTTATCCCTTCTGTTTCTAAAGGTGAATTTACTGCACGCATCCTTATAACCTAAAGCATCCCTACACATATTTGAGAGGCTGAGGCTTAAAGCTGCAGGAAGGTTAGACTACACAGTAATACTGTGCTATGTTTGATCCATCATAGTGTTTACGGCACAGCACATACAGCAGCTCTGCTATATTCTACTCAAAGCCCAAAGTTAAGTGCTGCAATAGTTACTTTATCCAGATATAAATACCTATCCTACTGCCAATCCTCTGTTTGGATATACAAGATCGTGTTTGCCAAATGGTTAGAGATGTGTCTTGATTGGTAGTTTTGCTTCCACAGTCCTCATCGGGATGAATTGTTGTCCATCTCCCGTATATATCGATCCATTGCACAGCCTTGGAttcactctttttttaaatttttttatcagGTTTATTTGATTCAGGCGGTGTAGAAGCACCTggctttctctcttcctctagTCCTCCCCAcatgttttttcttctctctctctctgtctttctctctctttcactgtaGCTCTTATAAATATGCTGAAATGAAATATACTCTGTCGTTAGTGGTGAATGATGTCTTGTGATACTCTCTCTACGCCCTTGGATAGTGCTGTGTTTATTGTGTATGATGTATTCATATTAGTATTTATGATAATGATaagtcagagaaaaaaaaatataagacTCTCCAGAATTCTGCTGTATTCTTATTATATGGGATCATgtgaaacaaaaatgaaataaacttgaaatTATTCTGTTGAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 65263 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 71702 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 75511 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 76925 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 79179 12371821 ~ 12373308 (-) True G49178
TU65777 lncRNA upstream 136877 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 192045 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 192449 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 232426 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 300817 12768820 ~ 12771419 (-) True G49372
XM_039802007.1 mRNA downstream 2819 12440017 ~ 12449668 (-) True plp2
XM_039802008.1 mRNA downstream 12578 12415603 ~ 12439909 (-) True prickle3
XM_039801994.1 mRNA downstream 37115 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA downstream 37115 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA downstream 37441 12412221 ~ 12415046 (-) True fam110a
XM_039802010.1 mRNA upstream 697 12468700 ~ 12493767 (-) False LOC120559913
XM_039802009.1 mRNA upstream 697 12468700 ~ 12493767 (-) True LOC120559913
XM_039800034.1 mRNA upstream 26002 12494005 ~ 12499465 (-) True timm17b
XM_039800029.1 mRNA upstream 36398 12504401 ~ 12511572 (-) False gpkow
XM_039800028.1 mRNA upstream 36398 12504401 ~ 12511572 (-) True gpkow
TU65695 other downstream 13762 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 60816 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 229485 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 283278 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 324062 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 784409 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1672377 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2064121 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2377335 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2377335 14845338 ~ 14853817 (-) False G49845

Expression Profile