RNA id: TU81557



Basic Information


Item Value
RNA id TU81557
length 432
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G60821
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11603180 ~ 11603611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtaataaaataaaatctgtaacaacctgtaacaaaataatatctctcttttaaaataaataaataatatgaaataatgttctaaatatgacctcttctgtgttagaaaatccagctacaacaaaatatgtcttacagtttttcacgatcgctatgacaattttttcaatacttttaacaactttcctaaactcttaacgcaccaacacacctacaacacacgattggcaaaacagttaatttcatgctcaaaatcacacattgtaaactaaactccaacactgattttcaaaatacaataattcactaacacaatacactatgtttaccaaaacaatgcaatcatgtctcaaaatcaaatacttcttccacaacactaacacatgttctctcccaacaggaacatttagtcaatcatagcacaatgtcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81498 lncRNA upstream 58521 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA upstream 74425 11528049 ~ 11528755 (+) True LOC120561253
TU81448 lncRNA upstream 368600 11234347 ~ 11234580 (+) True G60730
TU81440 lncRNA upstream 379218 11210665 ~ 11223962 (+) True G60722
TU81441 lncRNA upstream 389080 11211588 ~ 11214100 (+) True G60723
TU81558 lncRNA downstream 167 11603778 ~ 11604436 (+) True G60822
TU81608 lncRNA downstream 192370 11795981 ~ 11796327 (+) True G60864
TU81626 lncRNA downstream 265014 11868625 ~ 11873116 (+) True G60876
XR_005639416.1 lncRNA downstream 269881 11873492 ~ 11876959 (+) True LOC120560076
XR_005639417.1 lncRNA downstream 273362 11876973 ~ 11880769 (+) True LOC120560077
XM_039804287.1 mRNA upstream 26826 11573980 ~ 11576354 (+) True LOC120561249
XM_039804291.1 mRNA upstream 325696 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804304.1 mRNA upstream 371293 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA upstream 371293 11218993 ~ 11231887 (+) False gtf2h2
XM_039804537.1 mRNA upstream 397068 11193487 ~ 11206112 (+) True oclnb
XM_039803776.1 mRNA downstream 124851 11728462 ~ 11790629 (+) True stxbp1b
XM_039803777.1 mRNA downstream 126983 11730594 ~ 11788757 (+) False stxbp1b
XM_039804627.1 mRNA downstream 234147 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA downstream 234573 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA downstream 238069 11841680 ~ 11848140 (+) True LOC120561470
XR_005639564.1 other upstream 850740 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 850740 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 850740 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 856232 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1622191 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 322572 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1317536 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1317536 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2503872 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2537831 14141442 ~ 14142050 (+) True G61338

Expression Profile