RNA id: XM_039803777.1


Basic Information

Item Value
RNA id XM_039803777.1
length 1865
RNA type mRNA
GC content 0.51
exon number 19
gene id stxbp1b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11728462 ~ 11790629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaggaggaggaggagagagaccaTGACAGgaccatgggagcgagtgaggaaatgATGGAAGAAGAGAGTAgttgacgatgtgAGATAATGAACAACGTCATCAAGAAGgcaagagaaaaaggaaaatggAAGGTGCTGGTGGTGGACAAGCTGAGCATGAGGATGATTTCCTCCTGCTGTAAGATGACAGACATCATGTCAGAGGGAATCACCATTGTAGAAGACATAGGCAAGCCGCGTGAGCCTCTGCCCAGCATGGAGGCCATCTACCTGATCACACCCTCAGATGAGTCTGTTGAGGGTCTGATTGATGACTTCAGAGACCCGAAGTCTCCAAGGTATCGAGGAGCTCACGTCTTCTTTACCGACACAATTCCAGACTTGTTGTTTGGACTGTTGACCAAATCCCGCGCCTCCAAAGCCATGAAGGCCTTGACTGAGATCCACATCGCCTTTCTGCCCTATGAATCTCAGGTCTTCTCCCTGGACAAGATGGATGCCTTTCAGGACTTCTACAGCCCATTCAAGGCTGACGTGAAGAACAACATGCTGGAGCGTTGTGCTGAGCAGATTGCCACCCTCTGTGCCACACTCAAAGAGTATCCTGGAGTCCGATACAGAGGGGAGTACAAAGACTGTGCAGTTCTGGCCCAGATGCTTCAGGAGAAGCTAGATGGCTACAAGGCTGATGACCCTACCATGGGAGAGGGTCCAGACAAGTCTCGTACTCAGCTGCTTATTCTGGATCGTGGCTTTGATCCTGTGTCACCTCTTCTGCATGAGCTCACACTGCAGGCAATGGCCTACGACCTGTTGGGAATTGAGAACGACGTCTACAGTTTTGAGACCAGTGGGATGGGAGAAACGAGAATGAAGGAGGTATTGCTGGATGAGGATGATGACCTGTGGCTGACtctgagacacaaacacatcgcAGAAGTGTCAACGGCTGTGACTCGTTCTCTTAAAGACTTCTCTGCCAGCAAAAAGATGAACACTGGAGAAAAGACCACCATGAAGGAACTGTCTCAGATGCTGAAGAAGATGCCTCAGTATCAGAAAGAGCTCAGCAAGTATTCAACCCATCTCCACTTGGCAGAAGACTGCATGAACCGCTACCAGGGGACTGTGGACAAACTCTGTCGTGTAGAGCAGgATCTGGCGATGGGCATAGATGCAGAGGGAGAGAAGATTAAGGATCCCATGAGGCTCATTGTACCCGTTCTACTAGATGCCACTGTCAGTGTGACTGACAAGATCCGCATTATCCTGCTCTACATCTTCCTTAAGAACGgTGTAACTGAGGAGAACCTGTGTAAGCTTCTTCAGCATGCCAGCATCCCACCAGAGGACAGTGACATAATTTCCAACATGGCCCACATGGGCATTCCCATTGTCTCTGAGGGCACCGCCAAGAAAGCCAAGAAGCCTGATCGTAAAGAGCGAATCAGTGAGCAGACCTACCAGCTCTCTAGGTGGACTCCTCTTGTGAAGGATCTTATTGAGGACGCCATCGAGGACAAACTTGACCCCAAGCAGTACCCGTACATTTCCCAGCGACAAGCATCTGCCAAAGCCAGCGCTCCCTCAAGTGCTCGCTATGGTAACTGGCACAAGAACAGGGGCCCCACAGAGATGAAGACGGGGCCAAGGATTATCGTCTTTATTATTGGAGGGATGACGTACAGCGAGATGCGCTGTGTGTATGAGGTCACCCAGGCCAATGGCAAGTGGGAGGCCCTGATTGGTTCCACCCACATTCTCACCCCACCTAAATACTTAAAGGAACTACAGCACCCAGACTTCCTGGACCCCAACGCCCCTCCAGAGGGGCCAGAGGAGCCGCCTGCAGAATAAAAGACAT

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81558 lncRNA upstream 126158 11603778 ~ 11604436 (+) True G60822
TU81557 lncRNA upstream 126983 11603180 ~ 11603611 (+) True G60821
TU81498 lncRNA upstream 185935 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA upstream 201839 11528049 ~ 11528755 (+) True LOC120561253
TU81448 lncRNA upstream 496014 11234347 ~ 11234580 (+) True G60730
TU81608 lncRNA downstream 7224 11795981 ~ 11796327 (+) True G60864
TU81626 lncRNA downstream 79868 11868625 ~ 11873116 (+) True G60876
XR_005639416.1 lncRNA downstream 84735 11873492 ~ 11876959 (+) True LOC120560076
XR_005639417.1 lncRNA downstream 88216 11876973 ~ 11880769 (+) True LOC120560077
TU81641 lncRNA downstream 109336 11898093 ~ 11898916 (+) True G60891
XM_039804287.1 mRNA upstream 154240 11573980 ~ 11576354 (+) True LOC120561249
XM_039804291.1 mRNA upstream 453110 11275018 ~ 11277484 (+) True ankrd34bb
XM_039804304.1 mRNA upstream 498707 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA upstream 498707 11218993 ~ 11231887 (+) False gtf2h2
XM_039804538.1 mRNA upstream 524482 11193542 ~ 11206112 (+) False oclnb
XM_039804627.1 mRNA downstream 49001 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA downstream 49427 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA downstream 52923 11841680 ~ 11848140 (+) True LOC120561470
XM_039804629.1 mRNA downstream 52923 11841680 ~ 11848140 (+) False LOC120561470
XM_039802658.1 mRNA downstream 332668 12121425 ~ 12158698 (+) True dpp7
XR_005639564.1 other upstream 978154 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 978154 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 978154 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 983646 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1749605 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 137426 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1132390 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1132390 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2318726 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2352685 14141442 ~ 14142050 (+) True G61338

Expression Profile