RNA id: TU81962


Basic Information

Item Value
RNA id TU81962
length 429
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G61160
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12999459 ~ 12999887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attatttttcacgtgatcaataccgaattcaatctaattggatgggaatatactgtaggctacgttgcatgtaacgcaccactacaagacgactggacagattcggccgcattctgcattcatttgcagcaaataattgcagcttgatggtggtaacgttagcactagtagtatggacggcgacatgattgaaaatgaagaaaacagagatcccagagattaggcagacaagcagcaagacattcccaatcatccctggccttatctgagagagatgtttgagataggctaggaggcgtcaagtatgactcctggccaatgtgctgtgtaactctaaaagtatggggaacttcttaattaatctatgtttagtaattcatattgtatcctttatttttctttctatatttgagcacacacacatacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81877 lncRNA upstream 317391 12679709 ~ 12682068 (+) True G61091
TU81853 lncRNA upstream 360599 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 390001 12609104 ~ 12609458 (+) True G61053
TU81833 lncRNA upstream 391402 12607644 ~ 12608057 (+) True G61052
TU81831 lncRNA upstream 395249 12603756 ~ 12604210 (+) True G61050
TU81973 lncRNA downstream 170906 13170793 ~ 13180491 (+) False LOC120560904
TU82004 lncRNA downstream 181695 13181582 ~ 13182257 (+) False G61192
TU82005 lncRNA downstream 181695 13181582 ~ 13182308 (+) True G61192
TU82008 lncRNA downstream 182732 13182619 ~ 13184450 (+) True G61194
TU82051 lncRNA downstream 424864 13424751 ~ 13424951 (+) True G61232
XM_039803769.1 mRNA upstream 66460 12909814 ~ 12932999 (+) False bcl2l16
XM_039803768.1 mRNA upstream 78988 12909814 ~ 12920471 (+) True bcl2l16
XM_039804579.1 mRNA upstream 134207 12860590 ~ 12865252 (+) True si:dkey-90l8.3
XM_039802811.1 mRNA upstream 161552 12831272 ~ 12837907 (+) True ccn1l2
XM_039802813.1 mRNA upstream 161552 12831272 ~ 12837907 (+) False ccn1l2
XM_039803795.1 mRNA downstream 132211 13132098 ~ 13180369 (+) True LOC120560904
XM_039804576.1 mRNA downstream 349254 13349141 ~ 13366210 (+) False lhx2b
XM_039804575.1 mRNA downstream 349255 13349142 ~ 13366210 (+) True lhx2b
XM_039804373.1 mRNA downstream 567672 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA downstream 567672 13567559 ~ 13645504 (+) False adgrd2
TU81938 other upstream 75623 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 75623 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1072858 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 2247019 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 2247019 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 1107596 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1141555 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1283530 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 1317652 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 1317652 14317539 ~ 14319506 (+) False G61390

Expression Profile