RNA id: XM_039802748.1


Basic Information

Item Value
RNA id XM_039802748.1
length 5767
RNA type mRNA
GC content 0.51
exon number 7
gene id setbp1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18074768 ~ 18129069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGAGGGAGCTTTCAGTCTGCGGGGTGAGATCATTACCAGACACCAGGCTCCGGAACCTGACATTCACCGATCggaaaagcagagagagagagagagagacagagtgagcgAGTGAAAACCCTGAACCAATGCAACCGGCGAGGAAAAGCGACCTAAACCAACCGTCTCCTGCCTCGGCTCCTCAGTCTCCCGTAGGCTACTGGCGGCTGAAAGCGCGGTTTTGCCGCTGACATTTTTCCCGCTGGATTTGGGCTTGTAGTCGGATGCGGGCTTGTTTTGACTGCAGTAATAGTCCtactcccccctcctcccctacCAACCGAGTAGCGGATTTGCGAGGGATCTCAGCGCTGTGCAGCTCCCCGAGTGACCAGCGATCCTGCAAGGCACCGGAGACGCACTCTGCACCGCCGCGGCTCCCCACCACACCAGTCAATCCGCAAGAGCCTCTAAAGATCTTATTTCTGTGAGGAATTGGACATAAGCGTCAAGTTTGcgattggattttttttctttcctgtgCCGCTACCTTGCTTCTGTCATCAGATCGGCTGAAAATcccattttcgttttttttctttccaaagCACCGTTGACGCCATTTTCctcggggttttctgtcaaaaaaaaaaaaaaagatatatatatacatatattctgGCACCGTTTGACAGCTCCCCGGGAGGCTGTCATCCCATCCGTCGCTTGTGTAAAATGTGTCTAAATGGATTGTAAATGATCTTGATAAAATATTTACACGTTAGAGCCgagtgtgtgacaacattagaCATGGACTGTCCCTGGCTTCGCTGTGTTCCTGTGGGACAACCAACCCAACCCCAGTAGGTGATTGACAACAACCAACCAGCCCGACAGATTACTGTTCTCTATCTTCCCATTGGCTGGCTGCCACAGCTTCCCCCATCCTGACTGGCTCTGGCTGGAGCGTGGATGGAGCCAAGGGATCTGGTTGGCTCGGCCCGACCCAAAGAGGCGGAGTTACAAGGAGGCAGGGTGGGGCCAAATGAAGAGGACCAGGAAGGAGCAGGGGGCATCAGTTTGCCGCGCAGTGATGATGTGATTAATGGTGCCATCAGCGAAGGGGAGGGGCTAGAGGAGCAGGTAGAGGGGCTTCTGGAGGAGCAGGAGTTCTCCATCAAGGAAGCAAGTTTCCAGGAAGGAAGTCTAAAACTGAAGATTCAGACCACCAAGCGCACCAAGAAGCCCCCCAAGAACCTTGAGAACTACATTTGCCCACCGGAGATCAGGATGACCATCAGACCTCCGGTTGGAGAGGGCAAAGGGGGGCGGCAGGGACGGACAGGAGGCGGGGCAGGGCGGGGCCAGAAAGACGAAGAACGAGGACCCCCCAGAAAAAGGACATACGAGCGCCAGTTCAGAATGCctgagcagagagagggaggcctGCTGCAACTACTGGGAGATCACACTCTGCCCAAACACCAGCTTCGCAGCTCCCTCCctcctgcacacacactctcacacacacagcaaacacagcACACCCTCATGCAACAATTCCAACACCCTCATGCACATCAGCACCAAATAAATCCGGACTGGATCACGCCTTCAGCACCTTCTGCATCCCCGGCCAATCGTGCAGATTCTGAGCCAGCCAGGGAACTGGCAGGAGCCAGTAGGAGCTCTTTGCTTGATCCAGCCCAACCTTTCTCACGAACAGCGACACAAAGCCCCTCACCTCAGAGATCCCTGACTCCAGACCTGCAGTTGCCAGTGGTTACAGATGCCAGTATTCTCAACCTAACCTCTCTCAGCAGGGGGAAGGGTTTGCAAGAGGTCAGTGAAATGCTCTTTGGGAACATCAAGAGGAAGTACGGCAGGAAGGACTCCCAGAGGATGCTCTGTAATCCCCACAGTGCTGATACACCTTGGGGAAGACAGCCAGAGAAAGGATCGGAAAGCCCAACTAATTCCGAGGAGAGGCAGAAGTACAGGCAAGAGGAGACAGCTCAGCGGTTTCATGAAGAAAGAGAGGcaaggagaaaagaggaaagagagcgaGCGATTGCTGGGAGGAGAAGTGATGAAGAAGACAGAGGGATGCCCATGCTGACAGAGGAagggaaaggaagaaagagGCGGAGGAGGCCTTCTTTTGATGAGTCATTTTGTGTAGATGAGCAATTACAGGACTCTGACACTACAGAGAAGCACCAGCCTGGGCCCCCAGAACCCAAAGTAGCACATAAGATGGAGACTCACAAAAATGAATCTCGACTCATAAGTCACGCTGATGTCAGTAGAGAGAGGATAGAAAAAGCAGAGAGAGCAGATAAAGGcgataaaagagaaaaaggagaccGGGCAGAAAGAGGAGAGATAGTTATAAGcgggtctgacttaatgtcaGTTTTGAGTGCAAATAGAATGAAAAAGAACCCAGTGGGTCGTCCTAAGATCAGCACAGACGCCCTTAAACACAGAGAGCCTACTCACAATCACATCAACAAAGCCAGTCTTAACACAAACCCCAGACTCCCTAGCCCAAACCCCAGCCTCAGGGGCAGCATCAGTCCTAGCCCAAGCCCTAAACCCAGGGCTAACATTAGCCCCAGTCTCAGCCCCAGCCACAGCACCAGCTCCACAGCCAGTTCCAGACAAACCAAGGCCAAGGACAGATGGTCCTACCTGAAAGCTAAAAGCCATGCCAGCCTCACGTCACCCCAGAGAGACAACCGGGGTAGCCCCTCGATCTTAACTGACCCACCCTCTGCCTTCCCCATCACCCCCTCTAGCCCCCTCTACACCAACACTGACAGCCTGACTGTCCACACACCCGTTAAGAGGAAACGAGGACGCCCCAAAAAACAGCCACTCCTTACAGTGGAGACCATCCATGAAGGTACCTCCACCTCACCTCCAAGTCCACTGGCACAGGATACCGCTGCAGGGCTAAACCGTAggaggaagacacacacacttaacacaTTAGTGCAAATGGCCTCCACGACCACCAGCGCCAATTCTAATCTGAAACTAAAGCGTGGCAGGGGCCCTTCCAGGCCAGTGAATAAGATGAAGCTTGGGAAAATGCAGAGCATCCTGAATGAGATCCTTTCAGGTTCCAGTCAGAACGGCGCTCTGGCTCTGAAGTCATCTTCAGCCCCTGTTTCCTCAGCTATGAGTGCCATGGCGTCCACCATTGAGGCTCGGCTGGGAAAACAGATAAATGTCAGCAAGAGAGGAACCATCTACATTGGTAAGAAGAGAGGGCGGAAACCCAGAGCAGAAACCCAAGGCTTAAACCCTCCCAAAACCACTAGGGACAAGCCCCTCATGTCTGTCTCCACATCCAGTCTCTATGAGAGCCCTGTAGTGCCTTCTGCCACCTTGTCTCCCAGCTCCAGCGCTCCATCCATAAGAAACAGCCACTCTGATGTCACTATGCCCAGTTTGCAGCCCATCTCAGCCCTGCCCTCCAAGCCCGCAGGCAGGAGCTTCCTCTCTGGGGGATGGAAACTGTCTCCTCCACGCCTTCTGGCTAATTCCCCTTCCCACCTGTCAGAGGGGGCATCAGTGAAGGAAGTGACCCTGTCCCCCATCAGCGAGTCCCACAGTGAGGAGACTATTCCAAGTGACAGTGGGATTGGGACAGACAACAACAGCACCTCAGATCAAACTGAGAAGGGCCCCGCCTCTCGACGCAGgTATTCATTTGATCTGTGTGGGTTTGAGGCTGCGGAGGCAGCAGCCCTGGAAGCATCCAACAGGGGCAGCAGAGCACGCTGTGAACGGCAAGTAACTGCTGTTGACAACTTCCTGTCACAGCAGGAAAAGAAGCAAAAGCATCATCGACGGAAGAGGAAGTGCCTACAGAGCCGGGATCATCTTCACTTTCTTTCTGAACTGGAGGAGGTTGTGACAAAGCTCCAGCAGCTACGAGTGTCTCACAGACGATACACCTGCTACCCCCAGCAACCATATCCCTCCATTTTCCGCCTCAACTTCCATCATTACTATCCTGTTACCTATGACTCCTACCCCTGTGACTCCAGCTCGTACCTCCGCAGGAGCGCCGATCTGAAGGCTAAGAGGAGACGTGGCCGTCCAGCCAAACCCAGCGAGCCAATCACATCGAAGCTGCCTTTTGTTCAAGGATATGGTTATCCGCTGGCAGGGGGAAATTACTATGCAGCACCGTATGCGATGCCTTACGCACCTCCTCTGAGTTTGGGCTACTTTCCCCCTGCTCCCCCATTTTATCTGCCCCACCACTCGCTAGGACCTGCACCTCCATCTCCCTTCATGAGGCCTGCTGTACCCCCTCCGAAGGCTTTCCACTCCAGTGGACACTCAAAGCTCCAGCCAGGGGCCAAGCTTCGCGGTGGCAGTGGCCCACTTCAGGGGCCCTCTGTAAGAGGAGAGGGCCTGGGATCCCTGGGCACTGGCAGTGCAGGTGGTCTTGCAGGGGTTCGTCTCCATAAGAGGAAGCACAAGCACAAACATAAGCACAAGGATGAACCCCTCCTTTCACTGCGAGACCGGCAGGAATTGGGTGGGCTCTTCAGCGGCGCAAAGACCAATGCACGTCTCAGCATGCTGAGTGACAGGAGGGACATGGCCAGTCAGGGCTCTTCAAAGCATCTGGAGAAGCAGAGGGGCAGTAGTAGAGGCTCAAGCCTGGGATCCAGCTTTGGGATGTTTGAGTCGGACCAGCTGTCCACACACTCTCTCGCTGACAGCCAGTTCCACTCCCGTCAGACTCGACAGCCAATAAACAGCTTCATGAGCAGCTACAGTAGCCAATCGCAGCGGTCAGAGTCAGCTTCTGACCTGTTTTTGGGGTCACGGGAGGACGACTGTGGTGGGAGGAGTAGGAAGACGAGGCTCACTGTGTTTGGAGATCAGGGCTTAATGTCATTCCAAACTGCCAGGCAGGAGCCAGGACAGATGAACAACTGCTCCAGTTCCTCCCTCACTGgATGACATTGACAAAAATGAATACAGACTTGACGTTCACTGTGTTGGACCGACTAactcaagcaagtctcaagagTCTGCACACAGAAATCAATGGAAATCAGCGCCTGCCTATACGGACTGGACAAGTATATTCCATTTTCAAAAACTATAGAGCATGTATTTGGAAATGATGAGTTATTTGTCTTACTGCTTTCACATCATATatcactatatatataatatatatatatatatatatactatatataactGTTTCGGAGAGGAGGAAACCTCTGTGGATAATTTGGCTGAACACTAAAGGAATCCTAACCAGGAGAAGCTGACAGCAATGACGGCAAGGGTGGTGAAGACAACAACTCCCTTGATCCCAAACTTCACAATGTCACCAAACTGCAACTTTTGTTATTGCTTTGATGGAGAGACCCTTAGCAGCAGAaaatgatatactgtacatttaagcAGTATGTCCAGGAATCCATATAATATAGCTTGAGTCTGATTGAAAAGAAGATATCAGAATACAGATGTGTCAGATGTAGCAATATTCTGTAGTTTAGGATTAAAACAGGATATTCTGTgacatatatttgtatttttatgtggGTTTATTGAAAGTCCATTGGTACCTTGAGCAATTTGAGGAATAAATGTTTAATCTTTTTCTctgtaatttaaatatcacatATAAAGCAGCTCTATAGATTTTGAGTCACTAACTGGTGGCGTTATTACATCTGGATGACATCACACTGTGTTGAAATATATGAagaataaataatgtttttgttcaGGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83529 lncRNA upstream 18619 18054799 ~ 18056149 (+) True G62372
TU83519 lncRNA upstream 57320 18015405 ~ 18017448 (+) False thbs4a
TU83482 lncRNA upstream 133922 17939027 ~ 17940846 (+) True G62344
TU83414 lncRNA upstream 260955 17813589 ~ 17813813 (+) True G62294
TU83396 lncRNA upstream 316711 17757855 ~ 17758057 (+) True G62280
TU83666 lncRNA downstream 164363 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA downstream 164363 18293260 ~ 18295306 (+) True G62484
TU83688 lncRNA downstream 184314 18313211 ~ 18314777 (+) True G62502
TU83694 lncRNA downstream 191746 18320643 ~ 18321158 (+) True G62508
TU83741 lncRNA downstream 236383 18365280 ~ 18388485 (+) True G62533
XM_039803164.1 mRNA upstream 45382 18017367 ~ 18029386 (+) True thbs4a
XM_039804311.1 mRNA upstream 63738 17998689 ~ 18011030 (+) True cmya5
XM_039804312.1 mRNA upstream 63738 17999766 ~ 18011030 (+) False cmya5
XM_039804126.1 mRNA upstream 76387 17991866 ~ 17998381 (+) True tent2
XM_039802172.1 mRNA downstream 4750 18133647 ~ 18139334 (+) True slc14a2
XM_039804525.1 mRNA downstream 103831 18232728 ~ 18237999 (+) True riok2
XM_039802123.1 mRNA downstream 110411 18239308 ~ 18244773 (+) True LOC120560024
XM_039803282.1 mRNA downstream 116604 18245501 ~ 18268581 (+) True epg5
XM_039804346.1 mRNA downstream 141822 18270719 ~ 18280112 (+) False dnajb5
XR_005639579.1 other upstream 65450 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1540619 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1598863 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1598871 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2297627 15763114 ~ 15777141 (+) True mctp1a
TU83701 other downstream 201808 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 278490 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 287231 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 532260 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1306010 19434907 ~ 19448950 (+) False rasl10a

Expression Profile