RNA id: TU85963



Basic Information


Item Value
RNA id TU85963
length 1220
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G64183
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24049968 ~ 24058761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tattttattgtatataCAAAGCCAAGGGGACAGTAACAACCTGtgtaaaacatgttaaatgttaaaacatgttaaaactAAAATTTTCTGGCTGAATTGTATGGTATAGTcaccaaaaatatataaaggcTGAGGGGAAAAAAGACAGTCCATCAAACAATTTGACACTGTGACTGAGGTTATTATTACTAATGTGTCAGTCAGACCCGTATTATTACATCTCCCTTATTTTCCAAATGGACAAAATCATAACAAACTAAATTATCTATCAAGGACATTCTTTGTAACTTGGTGTAGCACAAATTTCAACAACTACAATACAAACATATTCCCTTCTGTGCCAAATGAAAAATCACCTGATGTACAGCACACAATTGTTTTCTAAATTAATTACAGCTCTCATATTCTTCTACAAAATATTGATCTACAGTAGATACTTTTTGGTTATACTACTAGTAAAGTTTCACTTATCTTAGAGAACATATTCCcagtttttaaatgtcattttcacATGGATTATTTGATAATAGCTGCACAAACcgtaaaaaattataatttcatCATGTCATAGGCAACAATGCATTTGGCTCATGTGATTCGCATTCAGTTAATATTAGTTAGGACTAAATCCTTCTAATATTcacatgccaaacatttgtGTTTTATAAGTTTATATGACCAGTCTCAGGCTGCTAATTCAGATCCGTTGCATGCTCCTCTAGATTTGCTGCATGGACCTCAGGTTGGGAGACACCTAGAAGACATTTCAAAATCGGTGCCAGTGCATGCTTTGATATCCTCAGGAGTGAGCCCCTCCCATACTTCTATCAGAGTCAGGCCTTTTGTCTTATCCACATCAAACACAGCCTTCTGTGATGATCCGATCCACACACTGCTTCCCAGTTAAAGGCAGGATGCATTTGTCCAATATCTTGTGTTTTCCTCCCTGAAAGAAAAAGGGTATTTGGTTAGAACAAAAACTTAACTAGAGGCCAGTCACCTTCAGACTGTGTTAATACTTTCAGGAATGCAGCTTCAATTGTAATATATCCAGGGATGTAGCTTGTTATGTACACTCATTCTATCCCCTAAGGAAATACAGCACATATTCCAAGTGAGTCTGTCTCAGTTTCCCTGCCATTCATCTTAAAGAAAAGGCACACATCAAAATGCCTCTGATGCTGCCTCAAAAGCCCACATCATACATCATCCCCTCCCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85948 lncRNA upstream 32900 24015078 ~ 24017068 (+) True G64172
TU85904 lncRNA upstream 300133 23744939 ~ 23749835 (+) True G64130
TU85900 lncRNA upstream 314675 23734824 ~ 23735293 (+) True G64127
TU85820 lncRNA upstream 487736 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 606655 23431481 ~ 23443313 (+) False LOC120560908
TU85970 lncRNA downstream 42745 24101506 ~ 24104352 (+) True G64188
TU85984 lncRNA downstream 105916 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA downstream 105916 24164677 ~ 24168564 (+) False G64200
TU86026 lncRNA downstream 175513 24234274 ~ 24234488 (+) True G64235
TU86043 lncRNA downstream 303714 24362475 ~ 24362909 (+) True G64251
XM_039802040.1 mRNA upstream 36484 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA upstream 36484 24004085 ~ 24013484 (+) False rgs7bpa
XM_039803739.1 mRNA upstream 49163 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039803179.1 mRNA upstream 143512 23758721 ~ 23906456 (+) True ipo11
XM_039803178.1 mRNA upstream 145391 23754325 ~ 23904577 (+) False ipo11
XM_039803945.1 mRNA downstream 47229 24105990 ~ 24110189 (+) True c6h5orf51
XM_039803944.1 mRNA downstream 51559 24110320 ~ 24117183 (+) True fbxo4
XM_039803518.1 mRNA downstream 68102 24126863 ~ 24162470 (+) True ghra
XM_039802875.1 mRNA downstream 115680 24174441 ~ 24181811 (+) True znf131
XM_039802873.1 mRNA downstream 115920 24174681 ~ 24181811 (+) False znf131
TU85875 other upstream 356677 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1119763 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2451169 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3372052 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3561130 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 764957 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 764958 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1626211 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1855621 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2354108 26412869 ~ 26414597 (+) True G64814

Expression Profile