RNA id: XR_005639483.1


Basic Information

Item Value
RNA id XR_005639483.1
length 1761
RNA type transcript
GC content 0.50
exon number 10
gene id wdr31
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20473651 ~ 20490586 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCGGTTCGCTTTCTGGGCTTCCCGACAGCTTCAAAATAGTGTCCAAGGCGGTTTGAGTTGAATATCTGTGCAATCTTAATTGGTGCAATCTGCTTTTCCTTCTCAATATGATCAACAGATCCTTTCAGGACACATCCTCCGTACTGCTCTGTTTGATCTCGTTAAGCATTGCCATCCGTGCCTGGCCACCCTCATCAAAGTCTTCAATGTTGTTATTTTTCAATCAACAAAACCCCTTGTGTTCAAGCTATTGTCCGTGGGTGAGGGCAACGAgaaaaacacatgaatgaagctTTCCGTTTATTTTCCAATGGCTCGACTCCCGGGCGTGGTAAAGCAGAATATGGCGGACTTTCACTCCAGTCGGCTAGGCAGGGATACAGTACAgttatctctctctgtgtctgctcAAAAAACCAAGAAAGCCACACATAACATGGCATTTCAGCCGTAGCTGTCGGTGCCGCAACCAAAATATATCCCAGTTTGTATCAAAAGCCGTTTACATCCATGGCTCATCAGCGGGGtgagaagaaagaaataaacgccgtgttgttgctattttttttttcttcctcccagCCAATCTTCTCCTTTTCCTCAATTCtcttcatgtgtttttattacaGAGGCCATCCACTCCTCCGCTGGAAGGGTGACGTCGGCCTCCCATCGACAAGGGGGGAGTGTCACGTCCAACAAACGCCACACAAgTACCGAGAAGTCATGGGTAAACTACAGAGCAAGTTTCGCAAGAGGTCTGACCTCTACAGGGCATCTCAGGGGGAGAAGGCAGATAATACCTTTGACAGTCAGGTGGTGCAGTATGAACCTGCCCATCAAGGGTCCACCAACACTGTCACTAATCTCAACCCAGATCTGTGTGTTTCTGGTGGGAGTGACCAGGCTGTGGTGGTGTATGACTGGAAACAAGGCAGGATGTGTCAGTCCTTCCAGGGTCACAACCGAGAGGTTACCAAGGTGGTGTGTTATCCAGGCAGTACATGGATCTTTAGTGCCTCACGGGACAAGACTGTTCTGATGTGGGACCTAAACCAGGGGGACGAACCCATTCAGGAATTTTGTGGCCATGAATTGGTGGTCAATGGACTAGCTATCAGccctgATGGGAGAAAGCTGTGCACTGGTTCTCGTGACAACTGGATGTGCCTGTGGGATATAGAATCTGCAAAATgtgaacacagacacaacatttCGAGAAACCTGGTGACTCATGTGTGTTGGGTTCCTAGCAGCTCCTCTATAGTTCAGACCTCCGAGGATAAGACCATAAGGGTGTGGGACAGCCGTGCATGGCAGGTGACCAATACTTTTCCAGCCAAGCAATACATCCAGACCCACTGTGACGTTTCTGCAAATGGCAACTACTTGGTGTCCAGCAGCAACGGCTTTGGAGGCCAGGGCGGTGAAGCCACGTGgagttgtgtctgtgttattaGCTCTGGGACCTGCGTCAGCCCGGCTGTAAAGTTGTGGAGTACAGAGGTCATGTCCAGACCACCGCCTGCTGTATGTTTCTGCCTACACCTCTTGGTGGCACAGCTCAGGTAGCAACATCCTCCCATGACTGTTCCATTAAAATCTGGGATCAGAACACAGCAGtCTGTTTAGGGACGTTGTCTCTGGATAGTGCTGGTCCACTGATTTGTCTGGCTCCCACTGACTCCACCGATCTGCTGTGTGCCAGCTTCAACAACGGCCTCCACCATATCCAGGTTGGCCACGGATCAAACCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84956 lncRNA upstream 34860 20442154 ~ 20442952 (+) True G63377
TU84955 lncRNA upstream 35757 20441711 ~ 20442055 (+) False vps13a
TU84965 lncRNA upstream 85181 20392407 ~ 20392631 (+) True G63385
TU84680 lncRNA upstream 450646 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 451057 20025755 ~ 20026755 (+) True G63203
XR_005639468.1 lncRNA downstream 69502 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 76830 20565668 ~ 20566142 (+) True G63451
TU85055 lncRNA downstream 146751 20635589 ~ 20637358 (+) True G63457
TU85057 lncRNA downstream 146751 20635589 ~ 20637358 (+) False G63457
TU85062 lncRNA downstream 151920 20640758 ~ 20641102 (+) True G63460
XM_039803160.1 mRNA upstream 35719 20400947 ~ 20442093 (+) True vps13a
XM_039802690.1 mRNA upstream 76820 20397583 ~ 20400992 (+) True LOC120560324
XM_039803159.1 mRNA upstream 81695 20394843 ~ 20396117 (+) True LOC120560540
XM_039802113.1 mRNA upstream 96321 20364677 ~ 20381491 (+) False foxb2
XM_039803737.1 mRNA downstream 10292 20499130 ~ 20551819 (+) True stpg2
XM_039802570.1 mRNA downstream 361148 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 361148 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 430801 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 789564 21278402 ~ 21282508 (+) True LOC120560913
TU84360 other upstream 1028862 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1796651 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2058222 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 2061806 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 2146582 18330705 ~ 18331230 (+) True G62513
TU85087 other downstream 187579 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1100038 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2441061 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3203824 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4334880 24823718 ~ 24834631 (+) False cdc14b

Expression Profile