RNA id: TU85055


Basic Information

Item Value
RNA id TU85055
length 1276
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id G63457
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20635589 ~ 20637358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAAAGGATCCGTAAGGGTGATGGCTACTCGATAGCACATAGGGCTGAAATCAACCATGATAAAAGGCCGTGTGCTTCTCTAAACCTCTCTGTGAAAGCTGCTACCCCTAAAAACGTTCACCATCGTAAGCATAAGAAGCAATTTATTGAGCCTGAGCCATACCAGAAAGGCTTCCCACCAAAAGACGCGCAACCATTCCTTTGTTCCGGTTTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagagcAACTAAAGGCTACGGAAGACTTAGTTTCATTGTATTTGACGCCTGAGGACGATTTCACACAGCCACCCCCATGGAGCAGAAACGGATGTCTACACAAGCCTAAGAAGGGATCTAAGAAGAGATCTATTGAgCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCAACCATTCCTTTGTTCCGGTCTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagagcaaGTAACGACGACCGAAGACTTAGAGTCCTTGCATTTGTTGTCGTCTAAGTGTGATTTCACACATAGTACACCAAAGCCCTACCACCCCACGAGTGACTCCATTGAGAGGGGACAAAAGGACACCCCTTTACAAAAGACATCTGatgagACAATCCATGCCGTAGAAGCCggagaagggtctgaagacacAGGACTAACAGCGGCAGCTCCTACACCCCCTCAACCAAATCGGCTAGCTACAgcagaagggtctgaagacGCCGGAATAGCAGAGACACCACTTACAGCCCATCAATCGAGTCAGGCATCTTTGCAGGTGTTCCCTGAATATAATGTAGGTGCATACCTCTTTAACTGTATCTATAGCACAGAGGAAGGATCCGACTATGTCAGCTGTATACCACACACCTCTGTCATAACGGTGTCAGATAAAAAGTGTAACAGGGGGAATACATCAGTAACCAATCCTGTAAATGTATTAGAGGTTAACGTTCCATTCCTTGATAAGCAAGCAGTGCCTAATTATAATACTTACAACCAGTTTGAACACTGTGGGGCACTAGGAGGTCCTGAGCAGGTGACATTGCTTCAGGGTGAAGAGCTTTTTGAGTATTGTGTCAACACTACACCTCAACAACCTGCGTCAGATGGcaattataaacaaatacaatcagaaTTAGCCGAATTACGAAAACAAAACGATGCTCTTATGAATAAATTAGATGTCTTGCaaacagctaacacacaattGACTGGTTTGGTCACAGACTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85049 lncRNA upstream 69447 20565668 ~ 20566142 (+) True G63451
XR_005639468.1 lncRNA upstream 71144 20558340 ~ 20564445 (+) True LOC120560275
TU84956 lncRNA upstream 192637 20442154 ~ 20442952 (+) True G63377
TU84955 lncRNA upstream 193534 20441711 ~ 20442055 (+) False vps13a
TU84965 lncRNA upstream 242958 20392407 ~ 20392631 (+) True G63385
TU85062 lncRNA downstream 3400 20640758 ~ 20641102 (+) True G63460
TU85067 lncRNA downstream 5559 20642917 ~ 20643272 (+) True G63465
TU85070 lncRNA downstream 8834 20646192 ~ 20647497 (+) True G63468
TU85071 lncRNA downstream 8881 20646239 ~ 20647497 (+) False G63468
TU85076 lncRNA downstream 23482 20660840 ~ 20661157 (+) True G63471
XM_039803737.1 mRNA upstream 83770 20499130 ~ 20551819 (+) True stpg2
XM_039802893.1 mRNA upstream 145003 20476839 ~ 20490586 (+) False wdr31
XM_039802570.1 mRNA downstream 212628 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 212628 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 282281 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 641044 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 756415 21393773 ~ 21403390 (+) True LOC120561163
XR_005639482.1 other upstream 146751 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 146751 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1186639 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1954428 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2215999 18416128 ~ 18419590 (+) False tbx5b
TU85087 other downstream 39059 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 951518 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2292541 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3055304 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4186360 24823718 ~ 24834631 (+) False cdc14b

Expression Profile