RNA id: XR_005639468.1


Basic Information

Item Value
RNA id XR_005639468.1
length 599
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120560275
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20558340 ~ 20564445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCACACAGCTTCACAATTGCGTATGGACTGCGGAAAAGAAACACTTAGCTAGGCTAGCTAAGCTAGCCTACTTGAGTTATTTTGAAGCCAGTTAACGTTATACTTTGGTGTTACAAAAATACAAGAGAAAGTTAACATTTGAATGAAACAAGCGGGAGTTAGCTTCAGTGTTGCTAATGATAACAGCTAATGTTTTTGCAAGAGTAGTAAGCTAGCAGCCATAAAGAGAGGACATGAGGGCTTCTGTcagcaagcaaacaaacaacaagTGCAGTGGGATAATGGCTAATGGACTTTGATCATTTCGTCTTCAAATGGACCACTCTCCATGGGGAAAATGAGAATGGACTTTGACATCAAATAACgggACTAAGAAACAAACGGAGGCTGCCCTAGCATCACCAGAAGGGAGACAtgaggaagagagggaaagCGTCAGTCTGCTTGCTGGAGAATATTCTGAGAGGAACTTTGCCCGCAACGTGCAAAGtcttGAAGCAACGCCGTCATCGCCAGCTGAGTCTGATCACCGCTTCATGTTGAACATACTTTTATACAGCATAAAGTCATGTTTGAATAAAGGTTATAATAAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84956 lncRNA upstream 115388 20442154 ~ 20442952 (+) True G63377
TU84955 lncRNA upstream 116285 20441711 ~ 20442055 (+) False vps13a
TU84965 lncRNA upstream 165709 20392407 ~ 20392631 (+) True G63385
TU84680 lncRNA upstream 531174 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 531585 20025755 ~ 20026755 (+) True G63203
TU85049 lncRNA downstream 1223 20565668 ~ 20566142 (+) True G63451
TU85055 lncRNA downstream 71144 20635589 ~ 20637358 (+) True G63457
TU85057 lncRNA downstream 71144 20635589 ~ 20637358 (+) False G63457
TU85062 lncRNA downstream 76313 20640758 ~ 20641102 (+) True G63460
TU85067 lncRNA downstream 78472 20642917 ~ 20643272 (+) True G63465
XM_039803737.1 mRNA upstream 6521 20499130 ~ 20551819 (+) True stpg2
XM_039802891.1 mRNA upstream 67754 20473651 ~ 20490586 (+) False wdr31
XM_039802894.1 mRNA upstream 67754 20473651 ~ 20490586 (+) False wdr31
XM_039802893.1 mRNA upstream 67754 20476839 ~ 20490586 (+) False wdr31
XM_039802888.1 mRNA upstream 67754 20477812 ~ 20490586 (+) False wdr31
XM_039802570.1 mRNA downstream 285541 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA downstream 285541 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA downstream 355194 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803803.1 mRNA downstream 713957 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 829328 21393773 ~ 21403390 (+) True LOC120561163
XR_005639482.1 other upstream 69502 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 69502 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1109390 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1877179 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 2138750 18416128 ~ 18419590 (+) False tbx5b
TU85087 other downstream 111972 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1024431 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2365454 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 3128217 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 4259273 24823718 ~ 24834631 (+) False cdc14b

Expression Profile