RNA id: TU87249



Basic Information


Item Value
RNA id TU87249
length 219
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G65171
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27476748 ~ 27476966 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTAGTTAGTCAATACctgttactccactacatataggctactttaatacattttacatagCCTACTGTTACTGTACtgctttgcagattcagataaataatacaaaatataatggtAGGCTTTACTATTAGTCTTGATTAGACTGTATTGATCCTGGGGGAAATTCACGAGCTtcccagcagtatataaaataaaatagcccCACCTTTATCAGCTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87150 lncRNA upstream 86886 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 97533 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 105789 27299932 ~ 27370959 (+) False G65084
TU87119 lncRNA upstream 126193 27299932 ~ 27350555 (+) False G65084
TU87114 lncRNA upstream 276558 27199949 ~ 27200190 (+) True G65083
TU87374 lncRNA downstream 426109 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 525573 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 894490 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 985659 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 1144119 28621085 ~ 28621299 (+) True G65385
XM_039804557.1 mRNA upstream 3929 27470256 ~ 27472819 (+) True gpx8
XM_039802087.1 mRNA upstream 34552 27433995 ~ 27442196 (+) True areg
XM_039802078.1 mRNA upstream 48058 27422537 ~ 27428690 (+) True LOC120559995
XM_039802202.1 mRNA upstream 56031 27418709 ~ 27420717 (+) True LOC120560091
XM_039803935.1 mRNA upstream 59544 27394417 ~ 27417204 (+) True mthfd2l
XM_039803647.1 mRNA downstream 8736 27485702 ~ 27509635 (+) True tut7
XM_039803552.1 mRNA downstream 33460 27510426 ~ 27516589 (+) True isca1
XM_039803551.1 mRNA downstream 39824 27516790 ~ 27520440 (+) True LOC120560745
XM_039803548.1 mRNA downstream 44356 27521322 ~ 27527883 (+) True kiss1rb
XM_039803550.1 mRNA downstream 52284 27529250 ~ 27537821 (+) True psat1
TU87117 other upstream 174978 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 818779 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 834267 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 980420 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1873158 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2709882 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2769921 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2770973 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2771017 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile