RNA id: TU87150


Basic Information

Item Value
RNA id TU87150
length 406
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G65108
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27389457 ~ 27389862 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCGTTCTTCCTCGTTAAATGCAGCCCGCACAGACGCTCACCACAAAGAAATGCGCAAGGAAAGTGGCTAAACAAGATAGAAACCCCGtcgaaaaggaaaagaaacagggggcagacaaaaaaaatttgCCAGACAAAATGTACTTACCAACGAAATAGGACACCACAAGGGGGAAATGTGCTGTTTCTCTCCGCCTCCACGCCTCTATCTCTGCCTGTATTTTCCCGAAACCGTTCTCCGTGGGTTGCGTCGAAAATGTCACAGATTCCAGCAGTGGCTGTCGTCCCCCCCGGAATGCTTGTCCTCGGTTCATGCAACCATGTTGCCCTTAATGTCGCCTGCTGCTCTCATCCGGGCGTTTAGGGATTGAGCCGTCGTTTTAACACTGCTCAGGATCATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87147 lncRNA upstream 10242 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 18498 27299932 ~ 27370959 (+) False G65084
TU87119 lncRNA upstream 38902 27299932 ~ 27350555 (+) False G65084
TU87114 lncRNA upstream 189267 27199949 ~ 27200190 (+) True G65083
TU87101 lncRNA upstream 349858 27037053 ~ 27039599 (+) True ndufs4
TU87249 lncRNA downstream 86886 27476748 ~ 27476966 (+) True G65171
TU87374 lncRNA downstream 513213 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 612677 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 981594 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 1072763 28462625 ~ 28463104 (+) True G65378
XM_039803922.1 mRNA upstream 64627 27309200 ~ 27324830 (+) True LOC120560992
XM_039803923.1 mRNA upstream 64627 27310073 ~ 27324830 (+) False LOC120560992
XM_039804607.1 mRNA upstream 195938 27179360 ~ 27193519 (+) True snx18a
XM_039804611.1 mRNA upstream 349883 27012210 ~ 27039574 (+) False ndufs4
XM_039804303.1 mRNA upstream 378136 27005140 ~ 27011321 (+) False fsta
XM_039803935.1 mRNA downstream 4555 27394417 ~ 27417204 (+) True mthfd2l
XM_039803936.1 mRNA downstream 4835 27394697 ~ 27417204 (+) False mthfd2l
XM_039802202.1 mRNA downstream 28847 27418709 ~ 27420717 (+) True LOC120560091
XM_039802078.1 mRNA downstream 32675 27422537 ~ 27428690 (+) True LOC120559995
XM_039802087.1 mRNA downstream 44133 27433995 ~ 27442196 (+) True areg
TU87117 other upstream 87687 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 731488 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 746976 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 893129 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1960262 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2796986 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2857025 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2858077 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2858121 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile