RNA id: XM_039803923.1


Basic Information

Item Value
RNA id XM_039803923.1
length 2473
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120560992
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27309200 ~ 27324830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGAGCCAGCAGCGAAGGCGTGAGCTGCGATGCATGTTTAAAAGGCAACTTCAGAGGTCGACGATACAAATGTTTAATCTGCTACGACTACGATTTGTGTGCTTCGTGTTACGAGGGTGGTGCAACCACAACCAGACACACCACAGAGCATCCCATGCAGTGTATATTAACCCGAGTTGACTTTGACCTGTACTACGGTGGAGAAGCTTTCTCAGTGGAGCAGCCCCAGGCCTTCACATGTCCCTACTGTGGCAGAATGGGCTACACAGAGATCTCCCTTCAGGAGCACGTGGCTGCAGAGCACACAGAGACCTCCACAGAAGTGATCTGCCCCATATGTGCAGCGCTACCTGGTGGCGACCCCAATCATGTGACAGATGACTTTGCTGCTCATCTCACACTTGAACACAGAGCACCCAGAGACTTAGATGAGTCCAGTGGGGTGCGGCATGTGAGGAGGATGTTTCACCCTGGTCGTGGGCTGGGGGGTCCGAGAGCCCGCAGGTCTAACATGCACTTCACCAGCAGCACCACAGGGGGGCTCTCCACCAGCCAGAGCTCCTCACAGAGTTCCAACTACAGCAGAGAGGCCATGGACCCTATAgcagAGCTTCTTTCCCAGTTGTCGGGGGTGCGGCGCTCGGCGGGCGGACAGCTCAACTCGGGCCCCTCGGCCTCCCAGCTCCAACAGCTTCAGATGCAACTCCAGTTGGAGCGCCAACAAGCCCAGGCGGCGCGTCAGCAGTTGGAGACGGCCCGAAACGCCACCCGGGGCGGCGGCCGAGCCAATGCAATCCTCAATACCAATTCAGCTGCCGCAAACCCCAACGCCAACCACAATACCAACCCCAGTCCAAACCCGGGTCCGCCGGAGTccaacacacagcacactgcacatagctCCCAGTTTCTACTCAGCAGGCTGAGCGAACCGCGGCTGTGTGAGGCAGAGCGGCAGGCGTGCGAGGCCCAGTGGGCCGACCGGAGCTTGTTTGTGACGGAGCTGCTGCTGTCGACGCTGCTGCCTGACTCGGACGCCTCGGCCTCCTCCTCCGAAGACGAGGACGACTGTCACGGCTCATTGCGGAATTTCGCTGACTTCGAGGCCATGGGCTGTGTTGAGGTCATGACCTTAGACGTGGCACTGGAGAACCTCAACCTCAAGGAGATGACCCCGGCCACCAAGACGCCGAAAACCACGGCTAAAACAGCACCAACGAAGAAAGAGCCTCCTGCGCCGCCCCTTTGATGACATGGCCACTCCCTCCCCTCAAACCACCATTGTACTTGGCTGGCTGCTGAGTCAGTCCGACTGCCAATGGATGACAAAAAAGACTGCAGTTCTTTTtggctttgttttattttttatttttttcagtgattgTCATTTCAGCTCTGTCGCTCCACACTCAACCCCATGTTTATTACGTTGTGTACATTGAATAAAAGTAGTGAGACGAGAGAATGTGAAAGCAAGCAAGCGTGGTGGGTgcgtgagagaaagaaaaataactatataaatatattatagaaaAATTTATATGAAAGTTGATAATCAATTCCACATAACCTGTGTTTCCTCTAGCAGATGAGCAAAGCGTAGTTAACCGTTTTTAAAGAGACAAACGTGTCACACACTCACCCAGGGAGAGGAGGCAGACAGAAACCTCTCCGGTAAAAACGCTGCTGTGTATTTATAGTTATTGATTAAAGAACTGCTTGGAATGGTTTACCACAACTTAAGCATGAGCTTAAATCACCATGTGCCCATTTCTAACTGCACACTCACTAAACGGGGAGGTCTTTCTCTATTGCTCAGACACCTGAGTAACTGTAAATTAACGGTGCCACACTACTGGCAtttctgcacacagacacacacacacatgcagactgaTGGCCCGTTTGGTTACATTCATGTCCAGTCTCAACCCCCCTCCCCTTTGTGTGACATCACCTGTTTTGGGGTCTAAAGACCTTGCTTTATATCAACTGTGGGCACTTTGGTTTTTAATTGCATATCCAGTGTCCATTTGTGTACACTACAGATGCTCTACATAAAGGTGTAATGCAACTCGGAGGCAAACTGAGATGAAACTGTCCTCAGTGTGACCATTTTCAGGCCTTTTCTAACATGGAAGAAACACAACCTGGTCTTCACAGttcacccccccccacctcccccttcTCTTTTATGGAAGACCAGACGCTAGCTTCCCGTGATCTGAAATTACTTTTCTCTCCATTACTCATGAATGCAAAAATTACTCATCATGTGACTTGAAGGAGAGCATCTTGTATTGCTCTTTCCATTAATTTCTCTCAGTCAAAAAGATCTTTGTATGCCTCCACTGCTACATGAAGAAATGCAATGTATGTTTTTGGCTCAGCGAAAAGCCAAATCACAGGGTAAACCTTTCAGTTTGGAggacaataaaaaaatgttttggatgGAAATTAACTAACCCAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87114 lncRNA upstream 109883 27199949 ~ 27200190 (+) True G65083
TU87101 lncRNA upstream 270474 27037053 ~ 27039599 (+) True ndufs4
TU87102 lncRNA upstream 270474 27038810 ~ 27039599 (+) False ndufs4
XR_005639508.1 lncRNA upstream 410515 26897902 ~ 26899558 (+) True LOC120560738
TU86978 lncRNA upstream 413930 26893701 ~ 26896143 (+) True G64967
TU87147 lncRNA downstream 54168 27378998 ~ 27379215 (+) True G65106
TU87150 lncRNA downstream 64627 27389457 ~ 27389862 (+) True G65108
TU87249 lncRNA downstream 151918 27476748 ~ 27476966 (+) True G65171
TU87374 lncRNA downstream 578245 27903075 ~ 27904933 (+) True G65272
TU87444 lncRNA downstream 677709 28002539 ~ 28005121 (+) True G65314
XM_039804607.1 mRNA upstream 116554 27179360 ~ 27193519 (+) True snx18a
XM_039804611.1 mRNA upstream 270499 27012210 ~ 27039574 (+) False ndufs4
XM_039804302.1 mRNA upstream 298752 27005139 ~ 27011321 (+) True fsta
XM_039804303.1 mRNA upstream 298752 27005140 ~ 27011321 (+) False fsta
XM_039804261.1 mRNA upstream 307429 26981345 ~ 27002644 (+) True itga2.2
XM_039803935.1 mRNA downstream 69587 27394417 ~ 27417204 (+) True mthfd2l
XM_039803936.1 mRNA downstream 69867 27394697 ~ 27417204 (+) False mthfd2l
XM_039802202.1 mRNA downstream 93879 27418709 ~ 27420717 (+) True LOC120560091
XM_039802078.1 mRNA downstream 97707 27422537 ~ 27428690 (+) True LOC120559995
XM_039802087.1 mRNA downstream 109165 27433995 ~ 27442196 (+) True areg
TU87117 other upstream 8303 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 652104 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 667592 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 813745 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 2025294 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2862018 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2922057 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2923109 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2923153 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile