RNA id: XM_039803055.1


Basic Information

Item Value
RNA id XM_039803055.1
length 2171
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC120560486
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8465171 ~ 8482178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtctctctttctctctctctgtctctcgctcactctctctgtcttgtgCCAGCGCTGCGATCTCCTCTGGAAGGCCTACTGTCTTCAATATTGTTGAAATGGCTGATCAGCAAGACGACTGGGAAGCAGAAGATGCTATTTTCCTTGCTGATATGCTTCTGGCTCAAGAAAAAGAAAAGAAAGCCAAGGGCGAAGCAGACTCTGCTACAGGCAGTAGTTTTCAGGTCTGATGGGTGGAAAAAAATGCTGAAGGAAGTCCACTgctaaaaagaagcagaagTGGAGAGACACGAAATCGTGCTTCAGCTACAGTTTCCGTGGTTCCCAGTGAGGACTCTATTCCTTTTGAGTCAGCTGAGGAGGTTCTCACAGTGACCCAATCAGACTCCTCTCAACAGTTATTTGCCACTGCACATCTCCTGCCATCATTCGATGCAGAGACTGCATGCCAGAGGAGTGGCTGTGTACGGAGTGTGACATACACatccacaaaaaacacacactccatAACAGGGAGTCCTGCATTGGGGGAATTTACAAGCCCATAGAGCCAACAGTGTGCTGCGTAAAGCAAAATGGCGGATATACACTGGTCAATCAAGTATGTCTTTTGCCTACAGTGAGGCCTGTCCAGTTGTGCACGTGTGATCCTGCAACCATAACAGAATCAGCTGGTAGAGCAATAATTATGGTTTGCATAAATGgTCGGTATGATTTGCACTTGCCAAACTTGTCTTGCAAATTATGTCTGGCACAGTGGACACCTGACATGAGTGACCTCATACGCAGTGGGTACTGGCCAGCATCTGTGAATGCTGACACATTGTTTTCTATGGATGTCTTTACTTCATTTGAAGAGTTGAAAACTGTGGCTCCCAGTTTGTCGCGTCAGGGTTTTTTGCGGATGTTGGAGAAGAGGACCTGTCAATTTGGAAGGGCTGGCAAAATCCACGGAGACGTATTCCAAAGGAGTTATTTGGAGTACACATTCTGCCAGTACCATTGTGAGAATATGGCCAGTGTAGAGCACTTCACCTGCCCGGTGTGTACACCCAACATGATAGCTCTTTGCGCAGATGGCAACAGAAAGCAGTACCGATTTCGACAGTCAAAAGGgtCAGAGCAATCATATTTTGACGGTACTTTCATCGCCAAGGACGCTGAAGTACAGCATTTTGTTGAGGAGATCAGGAGTAAAATGAAAAGTACTGCCGGCAGAGGAATCTGTGGAGCCAGTCAGTGGTCTGCTGCACGGGAGACAGCCAGAAGAGCTAGTAAACTGGATGAAGAGGGCATTGAGGTGGTTGTTTGCCGACACGGAGTGCTATTGAAGGCCCTCAACATGTATAGGGGGGAAATATTTGCTTATCCGCTAGGGGTGTTAATAAAGTTCAGCTTCACTTACCTCCAGTCTAACTCCTGCTCCTTCCGTGACAGAAGaccagaccaaacaactaaaatGGATGAGGACGCCATGGAGGCTTTTATCTTCAATCAGAATGGAGACACTCTGGAGGACTTCGTTGAAGTTTATATCCATCTTTATCAGGATGTGGGCTGGGATGAGGACTATTTAAAATATCAGTTCTGGAGCGGATTAGATGATCCACTCGCCCAGATACTGCTGCTTGAGGACACTAAGCTACCTTTTAGAGTTTCTGGACCGAGCCCTTTGGGTTTGTGGTTCCTCCCTCACAGTAGCGCTTGCCGATCCAGAGCCAGCCGATTCAGAGCCAGCCGATCCAGTGCCACAGTCCTCATCTCAGGCCCAACTCAGAAAAGAGCCATTCGACAGCCCAGTCGGACAAGAGCCAGCAAGCTGCTGCACAGTCGACCAGAAGCCAGAGACTGCTCACAGCGATTGCCCAGCCGAGACTGCTCACCGCGACTCCCCTGCAGAGACAGCTCGATGCAAAATCCTCATCTCAGGCCCAACTCAGAAAGGGGCCAGCAAGCTGCTGCCCAGTCGACCAGAAGCCAGAGACTTTACCGGTCTCCGGCGCCCCCAGGTGCTTTGCCGGTCTCCGGCGCCCCAGGGACTTTGCCGGCCTCCGGTGCCCCAGGGACTATGTCGGCGGTCCGGCCGATTCCTGCCCCCAGGGTGTTGTCGGCGGTCTGGCCGACTCCTGCTCCCCAGGTTTTGTCCGCGGtcaaagtttacccactgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639401.1 lncRNA upstream 27573 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA upstream 27579 8436947 ~ 8437592 (+) False LOC120560008
XR_005639402.1 lncRNA upstream 33941 8428953 ~ 8431230 (+) True LOC120560009
TU80748 lncRNA upstream 41428 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 47321 8417642 ~ 8417850 (+) True G60147
TU80781 lncRNA downstream 717 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 109075 8591253 ~ 8591473 (+) True G60182
XR_005639469.1 lncRNA downstream 115364 8597542 ~ 8598388 (+) True LOC120560290
TU80794 lncRNA downstream 165043 8647221 ~ 8647449 (+) True G60189
TU80806 lncRNA downstream 249535 8731713 ~ 8731922 (+) True G60201
XM_039802098.1 mRNA upstream 30499 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 37426 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 37426 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 62602 8397481 ~ 8402569 (+) False LOC120560868
XM_039803748.1 mRNA upstream 62602 8399670 ~ 8402569 (+) False LOC120560868
XM_039803061.1 mRNA downstream 328376 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 379792 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 379792 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 440105 8922283 ~ 8933253 (+) True zgc:113436
XM_039803657.1 mRNA downstream 457651 8939829 ~ 8965106 (+) True LOC120560802
unassigned_transcript_250 other upstream 11301 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 13627 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 15956 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 17155 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 18320 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 731064 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 1444772 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 1444871 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 1444871 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 1444929 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile