RNA id: TCONS_00074600


Basic Information

Item Value
RNA id TCONS_00074600
length 1351
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_038027
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36896257 ~ 36924388 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTGAGGGTGGGGTTTATGGCAGCAGCGACAGCTTCACAGAAACTACAGGGTCTATGAGACGCGGAACAGGCGATTAATGCTCTCCTCAAGATAACACAAGAGACCGAGGAGGACAAAGTCACAGAGAGGTGGTGGCAGCTTGTCTGTGGATGTCTTGTGGTTTACCTGAAGAAGACAATTATAGACATGGCAGCCAATAAGAGCAAGGCTCAGAGCTCCCTCGCCCTACACAAGGTCATCATGGTCGGCAGTGGAGGCGTAGGAAAGTCTGCCCTCACACTTCAGTTTATGTATGATGAGTTTGTGGAAGATTATGAGCCCACAAAGGCCGACAGCTACAGAAAGAAAGTGGTGTTGGATGGAGAGGAGGTGCAGATTGACATTTTGGACACAGCTGGTCAGGAAGACTACGCGGCCATCCGGGACAATTATTTCCGAAGCGGAGAGGGCTTCCTTTTGGTCTTCTCCATAACAGAGCATGAGTCTTTCACGGCCACAGCAGAATTCAGGGAGCAGATCCTGCGGGTTAAAGCCGAGGAGGATAAGATTCCGCTGCTTTTGGTTGGAAATAAGTCAGACCTTGAGGATCGGAGGCAGGTTTCTGTAGACGAAGCGAGGGGGAAAGCTGAAGAGTGGGCTGTGCAGTATGTAGAGACTTCAGCCAAAACACGAGCCAATGTGGACaagGTATTTTTTGATCTAATGAGGGAAGTCCGAGCTAAAAAGATGTCAGAAAATAAGGACAAAAATGGAAAGGGAAAAAATAAGAAGAATAAGAAGAGCTTCAAAGAGCGATGCTGTTTACTTTGAACAGCACTTGGACTTTTCCCAACCAATCCTTTCGCAACTCTGTGGAAAACTCCATCAGAGGCCCCTTTTATTTCTTTCAAATCAAAACTTGACTAGTATATCGTTGTACAGGCCAAGGCAAGCCTTTTATTCTCTCAATTCATTTTAGGTAACTTGACTAAGATTGAATGGTATGCATACTTTTTAACAGACGATGACCACTATATGGCTACTGGTTCAAGACTGTGGCACTTTAGGATTTTTGTCAAATGTAGTTGGCCACTGTGTGCCAAACACTAACTTCATTCTTCTGTGATTTAACTTTTCGTCACAGTTTTATGTAAGAATCCACTTTAGTAGACAGTGTTAGGCTAGTGAtcaaaagtttggagtcagtaaaatgtttgtaaaagcGGTCTGTTCTAAATACCAGAGCTGCAATTATTTGATCACAAatactattaaaatgttaaagctGTGAATTATAATTTCatatataattgtataaatattcattttctttttggcttagtcccattattaatttggaatgaaccac

Function

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-267 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).

Ensembl:

ensembl_id ENSDART00000059756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075006 lncRNA downstream 149438 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00075421 lncRNA downstream 483007 36399911 ~ 36413250 (-) True XLOC_038021
TCONS_00075005 lncRNA downstream 900865 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00075420 lncRNA downstream 1063503 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00074592 lncRNA downstream 1262600 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075422 lncRNA upstream 2438 36926826 ~ 36930979 (-) False XLOC_038028
TCONS_00075423 lncRNA upstream 2438 36926826 ~ 36940479 (-) False XLOC_038028
TCONS_00075424 lncRNA upstream 13058 36937446 ~ 36940750 (-) False XLOC_038028
TCONS_00074601 lncRNA upstream 13306 36937694 ~ 36938506 (-) True XLOC_038028
TCONS_00075425 lncRNA upstream 32605 36956993 ~ 36959661 (-) True XLOC_038029
TCONS_00074594 mRNA downstream 1021206 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074591 mRNA downstream 1262430 35631440 ~ 35633827 (-) False XLOC_038015
TCONS_00074589 mRNA downstream 1338860 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074590 mRNA downstream 1561615 35170768 ~ 35334642 (-) True XLOC_038014
TCONS_00074588 mRNA downstream 1741168 35028297 ~ 35155089 (-) False XLOC_038013
TCONS_00074602 mRNA upstream 416852 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074604 mRNA upstream 417039 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA upstream 417039 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074605 mRNA upstream 557046 37481434 ~ 37613792 (-) False XLOC_038033
TCONS_00074607 mRNA upstream 557046 37481434 ~ 37748513 (-) False XLOC_038033
TCONS_00074599 other downstream 113592 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 125594 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 130229 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074596 other downstream 134963 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074595 other downstream 775731 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074610 other upstream 712569 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other upstream 823199 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074619 other upstream 1280019 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 1545058 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 2306138 39230526 ~ 39255210 (-) False XLOC_038048

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_04738315_04741396.mRNA True 1740 mRNA 0.41 4 CI01000009 4738229 ~ 4742426 (-)
bowfin (Amia calva) AMCG00000861 True 699 mRNA 0.58 7 CM030137.1 5799381 ~ 5811882 (-)