RNA id: TU354043


Basic Information

Item Value
RNA id TU354043
length 4983
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G298890
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20705477 ~ 20730010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggaaaaaaagagaaatcaaaGCAGACATACAAATCCAATGATCAAGGCAACAATCAGAGTCTAAAGTAAGTAAAGAGGTCAGGCAACGAGCTAACACGCTGAACTTGGCTAGCGTAACGGGAAAACAAGAAAAGCAGGCTGAGGTCAAAAACTAAACAATGGACTTGAGTAAAGAAAGGCTCAGTAATGTTGCAGCAATATATCTGcagcaagactttgcaaagaaACTGTGAACCTGTGTTTGGTTATATAGAGTAGTTTGTGGATTGAAGACAGGTATGTAATCAGTACTCTGGTGACCTTGGGTTGTGCTGAGAGTTTACTTCCTGGTTGTGCACGTGATCCAATTTCTGACCTGAGGGCTGTACTACGAAGCAAGCTCAAATTAGCCAATTTCACCTAACCAAACATTCCCCAACTGGGATAACTGGTATCATGACATGGGTTAACCGACGATGTGGGTTAAGCTGAGCCAGGTTTTCCTCATCAAGTCCTGCACACTTTCACTTTAAAAAGGGCAGATCTCACACTGGCTCGAATGCAGATGAAAAACTGCAGATGGATCACGTATATTTTAGGGCAGAAGAGCAAATGATAATTAATTCCTTTTAAAGAATTCAAATATATAATGATGgcaaaaaagcaacactgtCACTACTGCAAGATGCATGAAGGCACATGGCAAAAAATAGCTGACAATGTAAATGCGAGTTATAATAGATGTATAatctataattttatttttactcacatGACACTTACAGTAACTGtaattgcaaataaaaaagCTAGCAGTAAACTGTCATTAGTCATTGCAGCTGCAATCCCAACTGTGTTAGACAGCAGTCTTGTCAGCAGGTaaagacaaaatataaaaatattaaacgaAGTAGGCTACTTGTTTAAAAGTTGATGTCCTTACTCTCTTCTTTGTCTGATTGCTTCGCCTATGACAAAGTGGTGGGCCTATACCTCCAGATTACACACTGGCTGAAGAATTGGCCCTTCAATATATTTTTTCGACTTAATCCACAGGTGGTTAACACTAACAGACTTCCTCCAAACCTAGGACCACCCGCCTGTAGGCATACAGGGTGACCTCTGAGGTAAATCTGATTTATCAAGCGTTTTAACAGCTCCCAGGTATGGAGTCATGGAGTATAACCTCCTGCAAATTAAGTAAATCAAATTGTAAATTGAACAGCTGGAGTGTTGCAATGTTGAAATGTACTTCTCAAATAATTGTAATGTCTTAATGTAGCCTTGTTTCTTCTCTTTTGCAGGATAGACAAATTGCGGAATTATGAAATCAACTGGTCAAATAAAAATTGTGTCCACTGTTTAATATGTGGTGTTCAAACAGTAACATAAATTCATGAAGTAACAAAGTATTGTTCTGCAGTGGCCCGACTCACAGCCCTGCCTCAGAGTGTACCATAGCGAGAGGATGCACCAAGGGGTGGTGTCTCTCTTTCCTAATCATGGTAATACTGTGCAGCACTGTTATGTCACATGGCTTGACTGGGTCTACACTTAAAAGTCTTAAAAGTACAATTTGAGAATCTAATAGGTCATTTCTATCCTGACCGTAGTTTTCGCATGACCCTCTTAAATCTACCCTGATGTATAGTCAGTGACTCTGGCTACAGAGGTATCAGGACTTCTTGCAGGTACACCTCAGTTTCCAAGTCCATTCAACAGATCTACAATGCAGAATGGACAGGAACATTTGAAGAAAATATTCTAAAGCAAAACAATACAGTAAGGTAGTCAGCATTCATACCAAGTGCTAAGCAGTGATATAATGTAGACTCCCTGAGAATATGAGTCGTGAACAGACCCAGGCCATATTGCCCTAATGCTGGTAGTCAGGGACTGATCACAGCTCATgtaaacagaggaaaaaatgtcTTAAGGGGTTCTATATTCATGTTCTGTTAAAGCCCACTTTGTTACTACTAGATATTTCAGGAAGTGTGTAAATTAATAGTCAACCTGAACTCTGAAGCTATGCACTGACTTCCCTTTAGATTCATGCACCCACAGGGATGATttaacagtgatgtgtgtgcagTCTAATCCACCGATTACTCTGCAAAATCCTAACAGACTACAAACACATTACAGATCAACGAACAAGATTCTGTTAATTTACATAAACTACAACCCTAattccaaaaaagttgggacagtatggaaaatgctaataaaaataaaaacgagTGATTTATAAATTCTATTCACCCTGTACTATATTGAAAACACTACAGCACCACATTATTTGACGTTTTACCTTGTGAATTTAagaggtttttttaaatatgcactCATTTCAAATCTGATGATGGCAACATGCAGGACTGCAGGCCAATCTAGCACCCACACCCTCTGCTTACGCAGCCATGCACTTGTAATCTGGGCAGAATGGGGTTTgacattgtcctgctggaaaatGCAGGGACATCCCTGGAAAAGACGGCGTCTAGATGGCAGCATATGTTGCTCCAAAATTTGTACATATATTTCTGCTTTAATAATGCCCACATAGATGTGCAAGTTACCCATGCCATGGGCACTGACACACCCCCATACCATGACAGATGCTGGCTTTTGGACCTGACGCTGGTAAGAGTTTGGATGAAAAAAACTATTTGAAATGTTGACTCGTCGAACCAAAACACACGCTTCCACTGTGCTACTGTCTATCTCAGATGAGACCGAGCCGAGAGAGGTCGGTGGTGCTTCTGGACAGTGTTGACATATGGCTTCTGCTTTGCATAGTAAAGCCTTAACTTACATCTGTGGATGCAGCGGCGAATGGCGTTAACTGACAAAGGTTTACTGAAGTATTCCCAAGAACGTCACAATATCTATTACAGACGGATTTTAAGACGGTGACATTTGAGGGATCGGagatcacacacattcagaagTGGTTTTCGGCCTTGCCCTTCAAGCACAGAGATTTGACCGGATTCTTTGAATCATTTAATTATATAGAATCTTTTAATTATAGAGTGAAAAGCTTAAAATCCTACCCATTTATATTTTGGCGACCATTGTTCTCAAAGTGCTGGATTAATCGCTAATGCATCTGTTGGCAAATTGAAGAGCCTCGACCCATCCTTGGCTCATGAAGGACCAGGCCTTTCTTGGAGGTTCCTTATATAACACGTTTGCCTCATCTATGTAACATCACTTGTTTCACATCACCTTGTTATTTCAAACTGTCACATCATTATTCTTCCTAAATCACTCCGTCCCAACTTTCCTGGAACAACTTTTAAAGTTGATTAGATAAAACATGAATACATTACATTGCCtttatactgtttttgtttgaataCAATTCAAAGTAAATTTTAGCAGTAAAATTactgctttctgtttttatttgcatttcatttactgtcccaacttttttggaatTGGGGTTGTCTCTTCCTGAAATCTCTAGCATGCCGTAGAAATCCTTTCACGACACGAGCAGCAAGCTCTACAGGATTCTGGAGGAATGGCGACACAATCGCAATTCCTAGATCTCTGATTGGACAGGAGGCAGCCTTTATACACTCTTAGTGTGGTTACTTTCAACTTAACCTGCCCGAAACAGGTTAGCCGTGTAGAGAAGGTTGCCATGGTGATCTACCCATCTTAAAAGAGAGCCATCTTTGGGGTACAGATAAGCCAGCATTTAACCCTAAGTTAGCTCGCTTAGCCTGCAGTCCTGCTTCGTGGTACACCCTCTGGTGATTGGCTGTGTGTTAAAGGTACCTGAATAAGTAAATCCCAAATCAGTTTCTATGTaatgtgaatgcgctggtgttgtATGAGATTACTCTGctgattaaaactcttcccacactgcaagcagtgatacggcttttCTCCATTGTGAATGCGCTGATGAACTTTGAGATTACCTTTATCTGTAAAcgtcttcccacactgcgAGCAGTGATATGGCTTTTCTCCATTGTGAATGCGCTGATGAACTTTGAGATTACCTTTATCTGTAAAcatcttcccacactgtgagcactgatacggcttttctcctgtgtgaatatGCAAGTGTGTTTTGAGATGACTCTGttgattaaaactcttcccacactgtgagcaacGATACGGCTTTTCTCCATTGTGAATGCGCTGATGTATTTTGAGGTTACCTTTTTCTGTAAAcgtcttcccacactgtgagcactcATATGGCTTTTCTCCTGAatgaatgcgctggtgtcgcTGTAGATTATTGTGTTGGGAAAAagtcttcccacactgtgagcagtgatacggcttctctcctgtgtgaatgcgctggtgtagTTGGAGATTTCCCTGTCGAATGAAACTCTTACCACATTCTGAGCAGTGATATGGCTTTAATCCTGTGTGAATGCGTTGATGTAGTTGGAGATTACTCTGTCGAATGAAACTCTTAccacactctgagcagtgatacaacttttctcctgtgtgaatgcacTGGTGTCGTTGGAGATTATAGTGTTGggcaaaactcttcccacactgtgagcagtgatacggcttctctcctgtgtgaatgttcTGGTGTCGTCTGAGATTACTCTGGTCAGTAAAACTCCTCCCACATTGAGAGCAGGGATAGACTTTCTCCATTTGCTGATCAGAGGTGTTACTATTGCGAATACCAGAGATTGTCTGCTGAATACTGGAGCTTCTTGTGGATGTAACGTTCTCATATTTTATCTCTCCTGATTTTATCAGTCTCTCGTATTCCTCATAGTGGCATCTTCTGATGTGTTTGTGGAGGTAAATTTGAGATGTATAGGAAAGTGAACACGAGGAGCAGAAGAAGACTTGTACCTGGGCATCATTCATTTCTGGAGCAGAAAATGGCCAGTATTAGAAACTCACTGTGAAATAGATACTAAATAATTAACCTATttttagaaacaaaacaaataatggAACTGAGGCATTCTGAATTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354044 lncRNA downstream 10454 20705477 ~ 20714490 (-) False G298890
TU354012 lncRNA downstream 47434 20676043 ~ 20677510 (-) True G298878
XR_004580093.1 lncRNA downstream 78553 20645389 ~ 20646391 (-) True LOC117599711
TU353941 lncRNA downstream 223804 20492009 ~ 20501140 (-) True G298823
TU353913 lncRNA downstream 294736 20429514 ~ 20430208 (-) True G298801
TU354085 lncRNA upstream 24962 20754972 ~ 20838639 (-) False G298906
TU354086 lncRNA upstream 89362 20819372 ~ 20838790 (-) False G298906
TU354077 lncRNA upstream 102996 20833006 ~ 20888652 (-) True G298906
XR_003402683.2 lncRNA upstream 202593 20932603 ~ 20947358 (-) True LOC113525588
TU354114 lncRNA upstream 219832 20949842 ~ 20950072 (-) True G298934
XM_034313607.1 mRNA downstream 71732 20613722 ~ 20653212 (-) True LOC113524752
XM_034313536.1 mRNA downstream 113675 20593509 ~ 20611269 (-) True LOC113524753
XM_034313535.1 mRNA downstream 125851 20593441 ~ 20599093 (-) False LOC113524753
XM_034313534.1 mRNA downstream 125851 20593444 ~ 20599093 (-) False LOC113524753
XM_034313540.1 mRNA downstream 133158 20584667 ~ 20591786 (-) True LOC117599679
XM_026911095.2 mRNA upstream 12060 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA upstream 12060 20742070 ~ 20750140 (-) False LOC113524743
XM_026911097.2 mRNA upstream 12060 20742070 ~ 20749625 (-) True LOC113524743
XM_034313470.1 mRNA upstream 255178 20985188 ~ 20990671 (-) True LOC117595662
XM_034313850.1 mRNA upstream 265791 20995801 ~ 20999074 (-) True LOC113525589
TU354008 other downstream 60404 20655999 ~ 20664540 (-) True G298875
TU353922 other downstream 282856 20440866 ~ 20442088 (-) False LOC117599698
trnae-uuc_16 other downstream 301362 20423511 ~ 20423582 (-) True trnae-uuc_16
trnae-uuc_15 other downstream 303018 20421855 ~ 20421926 (-) True trnae-uuc_15
trnae-uuc_14 other downstream 305583 20419290 ~ 20419361 (-) True trnae-uuc_14
trnae-uuc_17 other upstream 20490 20750500 ~ 20750571 (-) True trnae-uuc_17
trnai-uau_9 other upstream 227621 20957631 ~ 20957723 (-) True trnai-uau_9
trnar-ucu_11 other upstream 229486 20959496 ~ 20959588 (-) True trnar-ucu_11
TU354232 other upstream 342916 21072926 ~ 21073676 (-) True G299022
trnae-uuc_18 other upstream 480172 21210182 ~ 21210253 (-) True trnae-uuc_18

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU132249 True 2700 TUCP 0.40 4 NC_053120.1 24749001 ~ 24755967 (-)
striped catfish (Pangasianodon hypophthalmus) TU132249 True 2157 lncRNA 0.38 2 NC_047601.1 9255722 ~ 9257981 (-)
bowfin (Amia calva) TU125234 True 543 lncRNA 0.40 4 CM030132.1 19726572 ~ 19730564 (+)