RNA id: TU354085


Basic Information

Item Value
RNA id TU354085
length 739
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G298906
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20754972 ~ 20888652 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcTTTATGTACAATTTGTGCAAAAAACATTAAAGGTGTCGAGGACTACACTGTAAAGTCATTTTCAAGGCACGTACATGAGACAACAAAGAGattgtgaaatttaaaaaaatgaagaaaaagtcgCTTTGGTTGCTGTGGATCTCTCGGGATTATCCAGTTTAacccataaaataaaataaaataaaatgttgtgatgtagtgatgatgtTTTGGAGCTGGAGGTAAAGCTAATAATCGAAACGCTCGAGATTTACAGACGTTATGGCTTTTTCTTGGTTTTCCAAAATAAGCAAGTGTGTGTTctttattcaaattaaataattaaataattaataattaaataatgattgaGATTTGGAAGATTTAAGGACATGTAGATCATTAATTTGCAACAGCGTTTTGCTCAAATCCGCCTCACAACCGTTTCTGCTAATTATTCCAATCTGAATCGGTGCGAATCAGTCACTCAGTCCCGAACCCCTGAACACGCTctgcaaataaacacaaaacatcaacGTCTGAGTCACTGCGTCATTAAAaggcaaaaatgcaaaatgtcgTCTGGGTAATTTCCActcctgctttctttctctgaaacTTTAGAGGTGCAGCTGATGATTAAAACCGTTCGTCATgaattttggaagaaaaaaaaacagtctggaCTCAATCAGTGAACGTCGGCTCGTGAAGAATAAAATccaccacacagagagagagagagagacacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354043 lncRNA downstream 24962 20724944 ~ 20730010 (-) True G298890
TU354044 lncRNA downstream 40482 20705477 ~ 20714490 (-) False G298890
TU354012 lncRNA downstream 77462 20676043 ~ 20677510 (-) True G298878
XR_004580093.1 lncRNA downstream 108581 20645389 ~ 20646391 (-) True LOC117599711
TU353941 lncRNA downstream 253832 20492009 ~ 20501140 (-) True G298823
XR_003402683.2 lncRNA upstream 93964 20932603 ~ 20947358 (-) True LOC113525588
TU354114 lncRNA upstream 111203 20949842 ~ 20950072 (-) True G298934
XR_003402597.2 lncRNA upstream 178023 21016662 ~ 21020147 (-) True LOC113524815
TU354201 lncRNA upstream 178069 21016708 ~ 21019893 (-) False LOC113524815
TU354200 lncRNA upstream 179434 21018073 ~ 21018852 (-) True LOC113524835
XM_026911095.2 mRNA downstream 4832 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA downstream 4832 20742070 ~ 20750140 (-) False LOC113524743
XM_026911097.2 mRNA downstream 5347 20742070 ~ 20749625 (-) True LOC113524743
XM_034313607.1 mRNA downstream 101760 20613722 ~ 20653212 (-) True LOC113524752
XM_034313536.1 mRNA downstream 143703 20593509 ~ 20611269 (-) True LOC113524753
XM_034313470.1 mRNA upstream 146549 20985188 ~ 20990671 (-) True LOC117595662
XM_034313850.1 mRNA upstream 157162 20995801 ~ 20999074 (-) True LOC113525589
XM_034313849.1 mRNA upstream 157162 20995801 ~ 20997924 (-) False LOC113525589
XM_034313675.1 mRNA upstream 254838 21093477 ~ 21112429 (-) True LOC113524825
XM_034313609.1 mRNA upstream 281309 21119948 ~ 21126084 (-) True LOC117599722
trnae-uuc_17 other downstream 4401 20750500 ~ 20750571 (-) True trnae-uuc_17
TU354008 other downstream 90432 20655999 ~ 20664540 (-) True G298875
TU353922 other downstream 312884 20440866 ~ 20442088 (-) False LOC117599698
trnae-uuc_16 other downstream 331390 20423511 ~ 20423582 (-) True trnae-uuc_16
trnae-uuc_15 other downstream 333046 20421855 ~ 20421926 (-) True trnae-uuc_15
trnai-uau_9 other upstream 118992 20957631 ~ 20957723 (-) True trnai-uau_9
trnar-ucu_11 other upstream 120857 20959496 ~ 20959588 (-) True trnar-ucu_11
TU354232 other upstream 234287 21072926 ~ 21073676 (-) True G299022
trnae-uuc_18 other upstream 371543 21210182 ~ 21210253 (-) True trnae-uuc_18
trnav-uac_10 other upstream 893550 21732189 ~ 21732261 (-) True trnav-uac_10

Expression Profile