RNA id: TU91297


Basic Information

Item Value
RNA id TU91297
length 2191
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G76899
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4358744 ~ 4361429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTATTGCACAAGCGTTGGCTCCTCCTGCAGTTTTATGCAGACTTCACTGGAAGTTAAACAGCTACATAGTCACCTATCctatttctcattttaatttctcCAGGCTGAGCTCGTTACGATCGATTTATGTTACGGCTTTCGAACATAAACATCAGCACAGTTTTATAAAGCTGCTGTTTCCATTGGGGTCCTTTCATCAAATCGAACTCAAGAAATTAAATACGATACAAGACAACAGTGTCcttttatcaaaataatataaCATGCAGTGAGGAAAggtacagtgtgttatttttgttaaaaatgtttgcaGTCAGTCGATTCAGacacaatatttacattcacTTACTTATGCATTTACATGCGTATATCAAACAattaaatcaaagaaaaaaaaatgctttgggAAAATATCAACTCATCAGTAGCACAAAAAAATATCAAGCATggtatattttcatattacatttgaaaataaaatgaaatggttCATTTGGTGCAAAAATGTatagacataaaaaaaataggtaGTAGAGACATGTCATACTGCTAAATCATCGTTTCTAAACAGTGGTCAGTATGAAGCTTAGTAGAAAAAATGGTTCTTGATAAATGGTATGAAATAGCAATCTGCAAAATTCTATGTACATATGCAAATGATTTTCAATGGGTggacatacatttacataaaatacagtatttggCACATATTTCAAGCAttatatttgtttctttcagTCATTTGAATGTGTAACAAATGTGTGCAGTGTCAAAACAGGGTTTGAAATGCTCTGTACAAACAATTCTAAATCTACAGCAAAATAACaagtatgtaaataatattaatacttaaCATAATGTATGTTTTTGCAGTTTGGCTTTTGGTGGTTGATGGGCATCAACAGTCTTAGAGTAAACATCTTGCATCTTGAATTAGTAAGTGGTATAATATATGAGAAACTGATAGGAATGATGGTAAACACCCATGATTAAAACACAATCAAATCATAGGTTTGATTAAAGCCATGTGAACATTAAGGAGCATATAGTTAAATTAAGTGCAGTGTGAACTTCAAGATGATCTTTATTCGCTTGGAAATAGATCTAATAGACGATCATATGCAGAGGAAACATGCTCATCCGAACTCTTTGTTCAATACACACATTTGAACACATGATGATTGTTCAGTCAGTAGTTTGACCTTACCTATTGTCAGGTTGCCTTTTTCACTGAAACATACATATGAATGCCAAAACGAGTGGCAAAAATATGATACAAGACACAGAGGTtgatatttaggtttgctaGCAAAGCCTGCAAAATAGAGCAtgttaaaatgtaaagctttgaatgagaaaaaaaggaaatggcaGGGAAACTAAACATTCAGtacaaacattttcatcttcagtaagggctttatcctggtcagggttgtgctGGATCCACagcctatctcaggaacactgggcacgtgGCATGGATACACAGGGTATGGGACGGTGGTCCATCACACACCGACAACCATTCACATaccaatatgttttttttttgggagatggAAGAAAACTGtgaacccacatggacatggagaCAActtgcaaaactctgcacagaccaGACAACAACCTGAACTCATGATTGACCCAGGGATCCTGAAGCAGTTGAAAAGGCAACTCAACCCACTGCACCTTTGTGCCGCcccaatacaaaaatatatttataaaatgaatcGCCTACTTGTTACTGCGAGTAAAAGTGGAATTGGTCAGTACTGGCATTACCCGTGATACCAGAAAAGCGCTCTGGGCTGCATTTGATCACAATTTAGACGTTAGATCTTCATATTATCCAGCTGTAATTGTGAGGTTTTGCTCAGGCAGCGGTTCATTACCATCTCCGTaagcatatacactatattaccaaaagtattcggtcaacccatccaaatgatcagaatcaggtgtcctaatcacttggcctggccacaggtgtataaaatcaagcactgtttttacaaacatttgtgaaagaatgggccgctctcaggagctcagtgaattccagcgtggaactgtcataggatgccacctgtgcaacaaatccagtcgtgaaatttcctcgctcctaaatattccacagtcaactgtcagctttatcataacaaaatggaagagtttgggaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91249 lncRNA downstream 72921 4285623 ~ 4285823 (-) True G76860
TU91246 lncRNA downstream 74350 4283553 ~ 4284394 (-) True G76858
TU91240 lncRNA downstream 88399 4265653 ~ 4270345 (-) True G76852
TU91231 lncRNA downstream 116220 4242253 ~ 4242524 (-) True G76845
TU91199 lncRNA downstream 315548 4042934 ~ 4043196 (-) True G76813
TU91479 lncRNA upstream 130989 4491923 ~ 4493719 (-) True G77040
TU91549 lncRNA upstream 244371 4605305 ~ 4605679 (-) True G77107
TU91572 lncRNA upstream 277413 4638347 ~ 4638551 (-) True G77130
TU91774 lncRNA upstream 492122 4853056 ~ 4879593 (-) True G77291
TU91863 lncRNA upstream 641775 5002709 ~ 5055475 (-) True G77364
XM_034304750.1 mRNA downstream 24902 4332895 ~ 4333842 (-) True LOC113535176
XM_026910834.2 mRNA downstream 64608 4290072 ~ 4294136 (-) True sfrp2
XM_026936716.2 mRNA downstream 232251 4003726 ~ 4126493 (-) False cntnap5a
XM_026936707.2 mRNA downstream 232251 4003726 ~ 4126493 (-) True cntnap5a
XM_026936728.2 mRNA downstream 435470 3892480 ~ 3923274 (-) True gypc
XM_026927891.2 mRNA upstream 53109 4414043 ~ 4469641 (-) True tmem163a
XM_034304391.1 mRNA upstream 144357 4505291 ~ 4515439 (-) False map3k19
XM_034304390.1 mRNA upstream 144357 4505291 ~ 4515439 (-) False map3k19
XM_026928518.2 mRNA upstream 144357 4505291 ~ 4515439 (-) True map3k19
XM_026927827.2 mRNA upstream 287286 4648220 ~ 4655253 (-) True mmadhcb
TU90967 other downstream 542708 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 1419342 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1552881 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1552881 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 2309359 2049023 ~ 2049385 (-) False LOC113547075
TU91765 other upstream 479026 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 970650 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 1962219 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2168112 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2168112 6529046 ~ 6565037 (-) False G78058

Expression Profile