RNA id: XM_026928518.2


Basic Information

Item Value
RNA id XM_026928518.2
length 4611
RNA type mRNA
GC content 0.44
exon number 14
gene id map3k19
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4505291 ~ 4515439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGTCTCCATAGGAACAGGCTGTAAACTCAACACTGTTCTGTGCAGAGCAAAACAAGCACAGGGGAACAATGAAGACTAAtaacacttaaaaatatatgaacGCTCACATATGACTGCACCATTTATGTGCTCCATATATTTGTTATTCCTCTGCATGGATAGATGGTAAGAGACTGGGTTGAGGGGACTACAGCATGAAGACAGAGGAAACAAGTTTTGTGGATCTGCTGTTCAAAGGGGAGCTGGAGGCAGTGACTCGAGGACTGGAAGATGGTCTTTACTCCTGGGAAGAGCTGGACCAGCCTCACAATGCCCAGGGCTCCACTCCTCTTATCAGTGCCTGTCAGATGGGCCTTGACATGGTCATGCATTTCCTTTTGGAAAGGGGAGCAGACGCAACACTGTGCAACTACAACAATCAGACAGCGCTGCATGTCAGTCAGCCAGACCTACAGAAGGAGCTGTTGGCTGCCATGTTGAGATCTTTAGCCCACCGTGCTCAGCTCTTAGAGGTCGCCTGGAGAGGGGATATTCACACCCTACAGCGCCTGCTGTTTGAGACAGACTCTGTAGATGTGAACATCCAGAACCAGAATGGGCTGACCCCACTGATGCTGGCAGTGAGGGATGTGGATCTGTTTGAGGGGTTTCAAGGCACCATGGGATGGGACTATGATCCTCCCAAAGTAGTGAAGACACTGCTGGCTCAATCTGCAAATATGGACATCCAAGACCAAAAGGGCTGCACTGTTCTTACCTATGTCTCTCAGATCAAGAGCTCAATGAAAGATGAGCTGCTCCAGATCATTCTGGAACATCAAACACAGTCAGtgccGACACACGTGATGCCAGAGTTTCATTTCCCTGCAGAATGCTGTAATAATTCCCACGGCCTGTCTTCTCCACACATGTTCTCAACTTTGGCCAACATGAAGGATGAAGAGGAAACATATGCATATATTGCTGTCCAAGAAGACCACAAAAATTCCCATCAAGATAAGATCATTGCCTTGTGCTTCCGAAGTGCCATGGAGCCAAAGACGAACAGCAAGGCAACTGGGTGGACAACATTACCAAGCCTGAGGGAGAGGAATAAATGTTGGACAAACTTTGGCATCCTGTATCCCACCTCTGATGTACCAGTGAAAACATCGTTAGTACCCATACCTCCAAGGCTCACAGAGAAGACCAAAGCCATTCTCGAGACTCCTCTAGTACCACATTTTTCTCAGCTTAGCCAGTCTGCTCCAAGCCTGGCCCTCCTTGATGCAAGCTTTCTACTACAAGTACAGACCAATATACACAACAGGCTCAGTACCAGTGATGTTAATGGACAAAGGGATCCCCTCCCTGTTCCGTGCCTGCGCGCTCCAAAACATTTGGCTCCACTTGACCAAGAGTACCGGGAAGGGCACGTGCTTTCAAACTTCCAGTGTGCACTGGCACCGAAGCCGACCAGCCTCTTATCTTTTGGCTCCAGGGAAATGAGAGATAGGTTCTCTAGACTGAACTCCAGAGGATCAAGAGGAAGGGGCAGTGAGGAGAGCAGCTATAGCAGTCAAAGCTCTCtggatgaagaggaagaggaaaagaacTGCCCTCAGCAGACAAGGAAGATGTTTGGGAGCATAGAGAGGGAACCACATACTGCCTTAAGGTCCCCTTCAACTGCTCAAAAACTGATGAATTCTGGGATTACAGAACACATTAATTCAAATAAACCCATGGCTATGAAATCTAAATTCATGAGGCGTCAAAAACATGAGACACAGACAATGAAGAACTCTGTAACAGAATTTTGCAAAATAGTGAAACCTTTTGAGAGGACATTagacacacaacaaaaaagtgaaGCTCTGGATGTGTGTGAGAAGAATAAGACAATATATCCGGCAGACGttccaaaaatgaacaaaagtgtGGAATTAACAGGGGGTCTCTCAAATGAACCTGATGAACCTAAGGACATGGTTACAGATGGCAGACCTGCTCATGGAGATGAACAGTCCAGCTTTTTTGTCGACACTGAGCAACACCAAGTCTCTCCTGTGAATATCGCATTACATCCCGCTCAAGCGAAATCCAGCAAAGCCAGTAAGACGACAGGAGCTGAGGAAATAAAATGCAGATCTTCTCACAGTAACCAAACAATTAACATCTTGGACCAAATAAATACAAGAAGGGACTATGGTAAGCCCAAAAAGAATAGACAGAATCAATCATCACAAGTTGCAAATAATGAGATGGCCCTCATAGGTAATGTTATTAGTGAGAAGATCAGCAACAAATCAGATAGGCCAAAGATAGCACCTATAAATCATGGTCCCAAACTCAAGGATGCACCCTTGAACCGGAGGAGGACTCAAGAGTCTCTGCATCAAGGAAGGCTGAGTGGAACAAAAAAGATATCAAACAAACCCCAAAGTCAAAAGCAACTTCTCAATCGGGACACAAAGAAGACAACAAGGCAAGGCTTGGGAAGGCTGGGAATTTTAGGGACACAAAGAGCAAAATCATCTCTGGACTATGTCAGTTATAGGGACATGTTTCTGGAAATCCATCAGGCAGATGAAGGACCAGccatttttgaaatgtttgcCACCCCAATATATGAAAACCTTAGAGCAGGCAGTTCTGTAGACAGGCCCAAGCAGGTGCAGTCTGCCCCTCAATTTAAGAGGCAAGTAAATGGACAACAGAGAGCTCAAAAACCTGCAGAAGGTAACAGGAGGAAACAGAAATGCACGACTTCTAAACGTAAACAACGCAAGAAGAAGGAAATCCAACCGCCCGAGCCTCAAAGCCACGATCAAGTTATTGATTCAAAACAGAATAATGCCAGTGTAATTCCTGGCACTGAGGGAAACAACCAGATAAGGAAACAAAAAATTCTCACCACTGAGGAAGATGAGAGGCATGGTTCAGACTTAAGATTACAGACTGAATGTAGTTCTGTACTGTCAATGATCAGAGAAGTTCCTTCAGATACAGATATTAGGATAGCCTTCCATAATCAGCAGGGAGATTTACCCATCTCATTTCAGTCACACAGATCACTCTATCTTAGCATGCAATTCTTACAACTAAAAACAGGAGATCGTAACAATAATAAAGGGGATGTAATCTCAAATGTAGTTGAGGACTCCATTGCAGTTCAGCTCCCATCACAACCCTTGATTAATACGTGGACAACTGACAGGACAAAGTCACCTGTATACCAGAGGTTTTTAGATGAAGTGGGTGAGGGGCCTGTTACAGATGATTTGCTGAAACGTTTGGCAGAAGAATTAATTTCGTTGGAAGAAAGAGAGGTGGAGACTTTAAAGCCTGAGAATCCAGAAATGACAAATGATGCTTCATcaaaattaaaggaaattttTAGTGAGCAGGTTGCTCCTTTGGACAATCTGTTTCGTACTGAGAGGTCCAGTGTAGACGAAACTATCACATGGACCAAAGGAGAAATTCTGGGAAGAGGGGCCTATGGAACTGTGTACTGCGGACTCACGAGTCAAGGCCAGTTGATTGCTGTCAAGCAGGTGACGCTGGATGTCTCTAATTCAGAGACAGCAGAGAAGGAGTATGATCGGCTGGAGAGAGAGGTAGACCTTCTGAAGAACCTTCATCACCAAAACATAGTGGGGTTCCTAGGCACAGCTCTTTCCGGCAATATAATCAGCATTCTGATGGAATACATCCCAGGAGGCTCCATCTCCAATGTCCTCAATCGCTTTGGACCATTACCTGAGAAAGTGTTTGCCCTTTACACACGCCAGATCTTAGAAGGCGTGGTTTACCTTCATGACAACAAAGTCATCCACAGGGACTTGAAAGGGAACAACATTATGCTTATGCCCAGTGGCGTCATCAAGCTGATTGATTTTGGCTGCGCTCGTCGCCTTAACTGCTTGACACACAGCGGAAGCCGTAGCGATTTCTTAAAGTCTGTGCACGGTACGCCATACTGGATGGCTCCTGAAGTGATTAATGAGACTGGCCATGGCAAGAAATCAGACATCTGGAGCATTGGATGCACAGTCTTTGAGATGGCCACAGGAAAGCCACCACTGGCACATATGGGCAAGATGGCAGCTCTTTTCTATATTGGGGCCAAAAAGGGTTTAATGCCTTCACTACCTGACGACTTCTCTGAAGAAGCTAAAGGGTTTGTGCAAGCATGTCTGACCAATGACCAGAAACTGAGACCATCAGCAGCAGATTTATTAAGGCATCCTTTCGTCTTTCACCTCAGGCAGGCTACGAGTAGCAAGCCTACAAATGTTCACCGTAAAGCTCATCAGAAAAACTCTTCCTAAAAGAGAAACTGTTCAAACAAAAGTGTGCCAATGCGTTTCTCGACTACATTCAAGTTTACGACGTGAAGGGAAGCATCTATATTAATGCTTGTGATCATGTAGGACAGTTTCTTAACCTCCTCCTTTCAATTACtaaattaatgtaaacatttaattgTTACACACATGAtctttcagaaaatgtttatatgctAAAATCTTACGATGAATATTACAGGCTTGCCTCAACTCTGTAAtacaatattgttttttttttttcacaaattgaCCAAAATAAAAGCTGTGATTACTAA

Function

GO: NA

KEGG:

id description
K17533 MAP3K19, YSK4; mitogen-activated protein kinase kinase kinase 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91479 lncRNA downstream 11572 4491923 ~ 4493719 (-) True G77040
TU91296 lncRNA downstream 143862 4358926 ~ 4361429 (-) True G76899
TU91297 lncRNA downstream 144357 4358744 ~ 4360934 (-) False G76899
TU91249 lncRNA downstream 219468 4285623 ~ 4285823 (-) True G76860
TU91246 lncRNA downstream 220897 4283553 ~ 4284394 (-) True G76858
TU91549 lncRNA upstream 89866 4605305 ~ 4605679 (-) True G77107
TU91572 lncRNA upstream 122908 4638347 ~ 4638551 (-) True G77130
TU91774 lncRNA upstream 337617 4853056 ~ 4879593 (-) True G77291
TU91863 lncRNA upstream 487270 5002709 ~ 5055475 (-) True G77364
TU91866 lncRNA upstream 494144 5009583 ~ 5010313 (-) True G77366
XM_026927891.2 mRNA downstream 35650 4414043 ~ 4469641 (-) True tmem163a
XM_034304750.1 mRNA downstream 171449 4332895 ~ 4333842 (-) True LOC113535176
XM_026910834.2 mRNA downstream 211155 4290072 ~ 4294136 (-) True sfrp2
XM_026936716.2 mRNA downstream 378798 4003726 ~ 4126493 (-) False cntnap5a
XM_026927827.2 mRNA upstream 132781 4648220 ~ 4655253 (-) True mmadhcb
XM_034304841.1 mRNA upstream 253122 4768561 ~ 4777460 (-) True LOC113535278
XM_026928521.2 mRNA upstream 254285 4769724 ~ 4777472 (-) False LOC113535278
XM_026928066.2 mRNA upstream 306793 4822232 ~ 4829512 (-) False nmi
XM_026928065.2 mRNA upstream 306793 4822232 ~ 4829512 (-) True nmi
TU90967 other downstream 689255 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 1565889 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1699428 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1699428 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 2455906 2049023 ~ 2049385 (-) False LOC113547075
TU91765 other upstream 324521 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 816145 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 1807714 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2013607 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2013607 6529046 ~ 6565037 (-) False G78058

Expression Profile