RNA id: XM_026936716.2


Basic Information

Item Value
RNA id XM_026936716.2
length 4915
RNA type mRNA
GC content 0.53
exon number 24
gene id cntnap5a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4003726 ~ 4126493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGCCGCGTGGCTTTAAGAGCGTCTGTTTTCCCCTCTCTCTGAGCATTTCCTCTCACCGGCTGCAGACTACAGAGCTGTCAGAGCTCACATCTGCTCTCACGCCACTGATCTCACACCACTGATCTCACATCACTCATCTGCCCTCAGCGCACAGAGGCTCTCGGTGTCGGAGCGGAAACACTTCGGCTGCGCGCTTCGGAAATAAATCCCGTTTCGGTCTCGGATTCGGATTTACCGGAGCTTTTACGCGGCCATGGAGTTACAGAAGTGGCGGTGTTGCGCGCTCGGTGCGTCTCTGCTCGCCGTGTTCAGCTCAGCCATGGCTGCCGTTCACTATAGCTGCGATGGATCACTAGCATCTGGACTGCCTGCGGCCTCTTTCCAGAGTTCTTCACATTTTTCAGAAAGTCGGGCCGCTAACTTCGCCAAGCTGAACAGAAGAGATGGAGGTGGTGGGTGGAGCCCACTGTTGACAGACAGGTCACCGTGGCTGCAGTTGGACCTCAGGGCACGCATGGAGGTGACGGCTGTAGCCACGCAGGGCCGCCATGGCAGCCATGACTGGATCAGCAGCTACACACTTCTCTACAGCGACAGCGGGAGTGTGTGGAAGCAGTACAGGAACGAGGACAGGGTTGCGAGATTGGTGGGGAACATGAATTCCGACAGTGCAGTCTATCACAAACTCAGCCAACCCATTCGAACCCGATTTCTGAAATTTGTTCCTCTCGAATGGAACCCCAGTGGCAGAATTGGGCTCAGGATCGACGTCTACGGCTGCGCATACAAATCATATGTGGCGGATTTTGATGGCAGAAGCTCTCTGCTGTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAGGATGTGATCTCGCTGCGCTTTAAGAGCCGACAAACGGAGGGCGTTCTGCTGCACGGGGAGGGCCAGAGAGGAGATTATATCACACTGGAGCTACACCGAGGGAGACTAGCTTTACACCTCAACCTTGATGATACCCGGGTCAGGTCAAGCAGCGGCCGTATGGTGGTCACACTGGGCAGTCTGCTCGATGACCAGCACTGGCACTCGGTGCTCATCGAGCGCTTTAACAAGCAGGTCAACTTCACCTTGGACCgacacacacagcacttcaGGACCAAAGGGGACGGAGACTCTCTGGAGGTTGACTATGAGCTCAGCTTCGGTGGGATCCCACTCCCGGGAAAGCCTGGAACGTTCCTCAGACGGAACTTTCACGGCTGTGTGGAGAATCTCTACTACAACGGGGTGAACGTCATCGATCTCGCCAAGCGACGCAAGCCTCAGATATACACTGTGGGAAATGTGACCTTTTCATGCTCAGAGCCGCAGCTGGTGGCCGTTACCTTCCTGAGCTCGAGCAGCAGCTTCCTGTCCTTTCCAGCTCCTGCGCTCTCTCCAGACGGGCTCTCGGTCCGCCTGCAGTTCCGAACCTGGAATCCCGATGGCCTGCTGCTGTCCAGTCGGCTGGCGTCGGACCCGGAACAGCATTACCTCTTACTGCACATCAGCAGCGGTCGTCTCCGCCTCACGCACCACACCTCCGACCTTAAAACCCTGGAAGTGTCCATTGGGCAAAGGGTGAATGATGGTCTCTGGCACTCGGTGAGTCTCAGCACCAGAGGTCTGCAGATCATCATGACGCTGGATAACGAGCCAGCTTCCACCATTCAGCTAGAGGACTACCTGGAACCAAGAGACAGTTACTACTTTGGGGGTTGTCCGGTGTCTCAAAATGGCTCTGGCTGTATGAACACTGTAATGGCCTTCCAGGGGTGCATGCGGCTCATCCTCATCAACAACCAACCTGTGGACTTCATGCACATCCAGCAAGGGATTGTGGGAAGCTGGAATCAAATAGAGTTCGACATCTGTGGCATTCAGGACAGaTGTCTCCCTAATTTCTGTGAAAACGGCGGCCGCTGCTCTCAGACGTGGTCCTCTTTCTACTGTGACTGCGCAGGCACGGGATACAGTGGTGCAACGTGCCATAACTCTATCTATGAAGCCTCATGCGAGGCCTACAGGCTTGCAGGAAGCACCTCAGGCTACTTCTCTGTTGATCCTGATGGGAGCGGCCCTCTGGGTCCAATTCAGGTCTACTGCAATATGACAGAGGACAAAGTATGGACCGTGGTCCATCACAACAGCAGTGATCCAGTCCGAGTCCAGGGATCGACACCAGAGAAACCCCACAAAGCGCACTTTGACTACGGTGCCTCGCCGGATCAACTCCGAGCCCTCGTGTCGCAGTCGGAATACTGCCAACAGACCCTGACCTATCAGTGCAGGCGATCTCGACTCTTCAACACATGGGatggTGCTCCCTTGTCCTGGTGGCTGGAACGTGGTGGTGAGAGGAGGACGTATTGGGGAGGTTTACTGCCTGGTGTTCAGCATTGCGCCTGCAGTCTGGCGGAGAACTGCATCGACATGAACTTCTTCTGCAATTGCGATGCTGACCGAGAATCATGGGAAAACGATACCGGGCTCCTGTCCTATAAGGACGACTTACCAGTGAGCGGAGTAGTAATAGGAGATACAAACCGAGTGAGATCTGAGGCAGTCTTCAGTGTTGGACCCCTGCAATGCTCTGGTGACAAGTCTCTTTGGAACGCGGCGTCTTTTTACGACGAGGCATCGTACCTGCTCTTCCCCGCCTCTCAAATGGAGCTCTCCTTCGACATCTCCTTCTACTTCAAGACCGGCTCGCCCTCGGGAGtctttgttgaaaatgtggGCTCGCGAGACTTCATCAGAGTAGAGCTGAGCTCTCCTTCAGTCGCTACCTTCTCGTTCGACGCCGGGTACGGGCCGACTGTGCTAAACGTTAAATCTCCGGTGCCGCTGAACGACCGCCAGTGGCACTGGGTCCGAGCTGAGAGGAATGTAAAGGAGGCGTCGCTGCAGGTGGACCAGCTGCCTCTGCGCTTCCTGGAgcctccagcacacacacatatacgccTGCAACTCAACAACCAGCTCTTCGTGGGAGGAACAGCCTCCAGACAGAGAGGCTTTCTGGGATGCATGCGAGCGCTTAATGTAAATggcgtgacctttgacctggaTGAGCGAGCCAAGGCGACCCCGGGTGTGAGCTCGGGCTGTGCGGGTCACTGCAGCAGCTCTGCGGGTGTCTGTCACAACCGGGGCCGGTGCGTGGAGAAGAGCACCGGCTATGTGTGTGACTGCACACACTCCGCATACGGAGGGCCCTCATGCAAGGAAGAGGTGTCTGTTTCCTTCGAGAGGGGTTCCTCGGTGACGTACACATTCCAAGAGCCTTTCTCCGTCATACAGAACAGGACGGCCCAGGTTTCCTCCTCGTCCTCCGCATACAGCAAGTCCAGAGACAACATGGCGCTTAGCTTCCTCACCACACAGAGTCCTGCTATGCTCCTCACCGTCAACACCTTCACCCAGCAGTACGTAGCGGTTATCCTCGCTCGCAATGGGAGTCTGCAGATTTGGTATCAGCTTCATAAGGAGCGAAGGCCCAGTGTGTTCAGCCCTGTGCTCACTAGTCTGGCAGATGGGAAGCTTCACCGACTCCGACTTCACAGAGAAGGAAAAGATGTCTATGTGCAGgTTGATCaagacaataaaaaatacaccCTCTCACAGGACACTGACTTTAACTCGATGAGATCACTAACCCTAGGAAAAATTACAGGAACTGATGCACTGGACGAGGAAGTAGCGCAAGCAGGATCCAGAGGTTTCATCGGCTGCTTTTCATCTGTTCAGTACAATCACGTAGCTCCACTAAAGGCAGCGCTGCTGAACCGCGGGAGCTCTTTGGTCAGCATACGAGGCCATTTGCTCGAGTCTAATTGTGGAGCGCTGGCAGATTTATCAACCTCTAAATCCCGTCTagACCATGTGGAAGAGGTGGGGACAGACAACAAGCATCACAAAGAAGACCCCCAAAGAGATTCAGCGGTAATTGGAGGCGTGGTCACAGCTGTGGTGTTTGTAACGCTGTGCTTGCTGGCTGTGATGGCACGCTTCCTATACCAACACCGGCAGATCCGGAGGACCACCAGCATCCAGGAGAAGGAGCACAGGCGCAGCCTTGAAGCTGCCTACAGGGCAGAACTTCACCTGAACCAGTCTATAAGGGACAGTATGAAGGAGTACTACATCTGACGGACATTAAAAGCCTTGTAGCCGCCGATCGTCCCTCCTCAAGTTTAGTCCTTCTGCACGCTTGTGGTGTGGACCTTACATAGCACGAGCTGCGTGGAGAAGATCCTTCACTAATGGAGCTTTGGAGACTGTAGGGATCTTTGGATCTAGGTAGGTAGTAGCTAGTAGATGCCCAACCTGTTGGCCCAGAGTAGCGGGTCTGGGTTGTGCTGTCTGGTTATGGTGTTATCAGGAAAGTCCCTGCATTTCTTGGACAATATTTCTTTGAGGAAACCCTAAAAAAGAAGCAGTATCTGGCTATTTTTTGAGACTTTTGGACATAAAGTGTAATGCTATTATCCACAATCTTGCCACccctctccctccccctccccaAGACCTACAAGGCCTACTGCAAGAGTATGGTTGGAAAttctatttattcattcttcatTGCACTTCTTCATTTGTTTTcctgaaaattattatttgatcGTGTCCATTAAGACTTTAATGTAGAGAAGGCTAAATATTATCCATGAATGTAGGCAGAGATCAAGAATGTTTTCAGAGTTTTACATTTGTGTAGAACAGGAGTGTCAGACTCAGGTCCTGGAGGGACGTCTAGAACCGGAGTGTGACAGCCCTGGAAGATGGGTCCAAAACTTTTACCCATTATGTtggtaaaatgtaaatttgaataTAAGGTAATGTGAATCATGATGTCTCCGTAAaactattatatttaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91057 lncRNA downstream 35649 3967873 ~ 3968077 (-) True G76688
TU91051 lncRNA downstream 65726 3937794 ~ 3938000 (-) True G76682
TU91019 lncRNA downstream 151519 3851396 ~ 3852207 (-) True G76658
TU90966 lncRNA downstream 187690 3809192 ~ 3816036 (-) True faima
TU90968 lncRNA downstream 198129 3786956 ~ 3805597 (-) False faima
TU91231 lncRNA upstream 115760 4242253 ~ 4242524 (-) True G76845
TU91240 lncRNA upstream 139160 4265653 ~ 4270345 (-) True G76852
TU91246 lncRNA upstream 157060 4283553 ~ 4284394 (-) True G76858
TU91249 lncRNA upstream 159130 4285623 ~ 4285823 (-) True G76860
TU91297 lncRNA upstream 232251 4358744 ~ 4360934 (-) False G76899
XM_026936728.2 mRNA downstream 80452 3892480 ~ 3923274 (-) True gypc
XM_034304686.1 mRNA downstream 187667 3810514 ~ 3816059 (-) False faima
XM_026934130.2 mRNA downstream 219333 3770234 ~ 3784393 (-) False parp14rs1
XM_026934120.2 mRNA downstream 219333 3770234 ~ 3784393 (-) True parp14rs1
XM_026934140.2 mRNA downstream 219333 3772777 ~ 3784393 (-) False parp14rs1
XM_026910834.2 mRNA upstream 163579 4290072 ~ 4294136 (-) True sfrp2
XM_034304750.1 mRNA upstream 206402 4332895 ~ 4333842 (-) True LOC113535176
XM_026927891.2 mRNA upstream 287550 4414043 ~ 4469641 (-) True tmem163a
XM_034304391.1 mRNA upstream 378798 4505291 ~ 4515439 (-) False map3k19
XM_034304390.1 mRNA upstream 378798 4505291 ~ 4515439 (-) False map3k19
TU90967 other downstream 187690 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 1064324 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1197863 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1197863 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 1954341 2049023 ~ 2049385 (-) False LOC113547075
TU91765 other upstream 713467 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 1205091 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 2196660 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2402553 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2402553 6529046 ~ 6565037 (-) False G78058

Expression Profile