RNA id: TU124897


Basic Information

Item Value
RNA id TU124897
length 917
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G105634
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26787940 ~ 26788856 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAAGGATTGTTATTACTCAGTTACAGGTCCACAGGTGAACAGGAGGGTGTGATCTAACCTCACAAATTGGAGGGAAGTTTGGCGCAAAGGGGTTCCAGTTCAGAAGGATGGGCCTCTGAGGATCTGCGGAATGGAAGGGAGGGTGACGTCCCTATGCAGGGGGTGTGGTGCCGTGCACTGGGAGAAGTCTGTAAGGGGGAAGCAAAGTGCCCCGATATGGAGCTGTACGGCTTAGGCATCAGTGTCGGGGAAGAGTAAGGGGAGAGGCGGCAGCCAGGCTCAATGGATGATCGAGGGGAGGAATGAGCCACAGCCTGGGCTACCTCTTCACTTAGCAAGGGGTGAGAGCTAGACAACAGTTTCATATCTTCAGAGAAGCGGCCCAGCGGCGATTCAGTTCCTGAAATGTTACAGCTGGGCAGTTGAACGGGGCAGGAATGCTGGGGCATAAGCAGAGAGCTGTGGGAACCTGCAGCACTGGAGGGGTCACTGTAGTGGAAAGTTCTTCCAGGACTTTGGACTGTGGGGCTGGGGGCTAGAGGAGTGTAGCAGGGAGAAGCATTAGCTGAGCCATATTGAGCAAGAGATGCTAATGCTGACCTTTCTAAAGGCAGctgggaggaaaaggaggacCGTAGGTTGATGGATTGTGTGTTTGATGAAGGAGAGCCTTCAAGGGCTGGAGTAATGTGGGAAAGGGTGGAGGACGGGGATCCAGTTGTGGGTGTATGGAAGAGGTTTAATGTACTAGAAGTCCTGCCACCCCCACCGGCAAACTGATGAAATGCAGATGTCTGTTTGGTATTTTGTGTTTGCTGACCATGGAGGAGCTGACTTGGGGCATGGCTGAATGATCCAGTTGAAAGAGGGCTAACATTTGAAGATATTGTGGTCAAGAGACCACATGTGGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124872 lncRNA downstream 41601 26746119 ~ 26746339 (-) True G105611
TU124869 lncRNA downstream 43980 26743703 ~ 26743960 (-) True G105608
TU124742 lncRNA downstream 179611 26599533 ~ 26608329 (-) False LOC113526510
TU124746 lncRNA downstream 179611 26599533 ~ 26608329 (-) False LOC113526510
XR_004578319.1 lncRNA downstream 179613 26598016 ~ 26608327 (-) False LOC113526510
TU124902 lncRNA upstream 30610 26819466 ~ 26819717 (-) True G105639
TU124929 lncRNA upstream 86739 26875595 ~ 26875834 (-) True G105666
TU125109 lncRNA upstream 316512 27105368 ~ 27107571 (-) True G105835
TU125118 lncRNA upstream 334421 27123277 ~ 27129172 (-) True G105842
XR_004578372.1 lncRNA upstream 354851 27143707 ~ 27144874 (-) True LOC117597606
XM_034305136.1 mRNA downstream 96205 26667267 ~ 26691735 (-) True rec114
XM_026913543.2 mRNA downstream 96205 26680356 ~ 26691735 (-) False rec114
XM_034305137.1 mRNA downstream 96205 26680356 ~ 26691735 (-) False rec114
XM_026913542.2 mRNA downstream 96205 26680356 ~ 26691735 (-) False rec114
XM_026913358.2 mRNA downstream 255806 26515521 ~ 26532134 (-) False ube2q1
XM_026913390.2 mRNA upstream 38168 26827024 ~ 26847963 (-) True pkma
XM_026913391.2 mRNA upstream 38168 26827024 ~ 26847963 (-) False pkma
XM_034304982.1 mRNA upstream 343273 27132129 ~ 27138338 (-) True LOC113526953
XM_034305079.1 mRNA upstream 349391 27138247 ~ 27143595 (-) True LOC117597534
XM_034304983.1 mRNA upstream 356032 27144888 ~ 27160099 (-) True si:dkey-151j17.4
TU124747 other downstream 179611 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 546935 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 1239012 25385325 ~ 25548928 (-) False si:cabz01090165.1
TU125182 other upstream 363456 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 2913296 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3554675 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3941102 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 4027723 30816579 ~ 30819614 (-) True G107803

Expression Profile