RNA id: XM_026913358.2


Basic Information

Item Value
RNA id XM_026913358.2
length 2950
RNA type mRNA
GC content 0.43
exon number 13
gene id ube2q1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26515521 ~ 26532135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGCGCGCACAGTATGCTGGGAATGCGCGTTCACGAGACGAACGGTCATCTTTAAACCCCAGAAAGAATCTTCTTCCGTTTAGCGCCACGACTCACAGCGATAGATACACAGTTCCCTGTATTTAAGTCTATATTTTTTAGATAGTTTAGTCAACGGGGAGGTGAAGGACAGGCAATATTGATTAAATGACACATTATGGATGCGGTATAAGCAAAATTTGGTTGCTTGTTGGTCCTCTGACAGCAACAAAACactgacgaaaaaaaaaaaaacgaaccaAGTAAAGGAAGGCGTTGTtattagcctgctagctaagttagctatcATTAGCTCCCAAGCTAAAGGTTTGTCTTAATAAcgtatatttctttatttgttgcTCTCTTGCTCGCTTATCCACCTCGGACTCGACTATACGTGACTATATCGGGTCCCGTCTTGTGCTTTTTATCCGGAGATGAGCGCAAGATGTCGGTTTCGGGACTGAAGGCCGAGCTGAAGTTTCTCGAGTCCATTTTCGACACGAACCACGAACGCTTCAGGATCATCGACTGGAAGCCCGATGAGCTGAGCTGCCAGTTTAACGTGACTGGAGAGAAGCTGCTCATTATCCACTGCAACATCACGGAATCCTATCCTTCAACGCCTCCATTATGGTTTGTGGACTCCGATGACCCAAGTCTGACCCAAATATTGGAACGCCTGGAGGATGTAAGAAAAGGCAATACGCTGcTCCTGCAGCAGCTGAAGAGGCTGATCTGTGACCTGTGTAGGCTGTATAATCTACCTCAGCATCCCGATGTAGAGATGCTGGATCAGCCTCTCCCCGCTGGCCCTGTCAACCAAGAAAGAAAGCATGGTACTACAGATGAAGTAACttcagaggaggaagaggaagaagacatGGGAGAGGACATAGAGGAGCTCGATCACTATGAGATGAAAGAGGAGGAGCCAGTAGATGGGAAGAAGTCTGAGGATGATGGCATCGAGAAAGAGAACCTGGCTATCCTCGAGAAGATCCGCAAGAACCAGAGGCAGGACCACTTGAACGGAGCAGTGTCAGGCTCCGTCCAAGCCTCAGATCGTCTAATGAAGGAACTTCGTGAGATTTACAGATCTCAGAGTTATAAATCAGGTATCTATTCAGTGGAGCTTGTTAATGATAGCCTATACGAGTGGCACGTCAAGCTAAGAACAGTTGATCCAGACAGCCCTCTGCACAGTGACCTTCAAGTGCTAAAAGAGAAGGAGGGCATGGATTACATCCTTCTCAATTTCTCCTACAAAGACAACTTTCCCTTTGATCCGCCATTTGTACGAGTAGTTTCTCCTGTGCTGTCTGGCGGTTATGTCCTTGGAGGAGGGGCCCTGTGCATGGAACTACTCACCAAGCAGGGCTGGAGCAGTGCCTATTCCATCGAGTCTGTCATCATGCAGATTAACGCCACTTTAGTCAAAGGAAAAGCCAGAGTGCAATTTGGAGCCAATAAGAACCAATACAATCTTGCCAGAGCACAGCAGTCATATAAATCACTGGTGCAGATCCACGAAAAGAATGGCTGGTACACACCACCCAAAGAAGATGGATAAGAAAAACGTCTCTTCATTCAAACAAGGACAGAATGTATTGGAGTCAACAGCTGTTcttctttttagatttttttttttttttcctttttttctttcccctctcAACCGCCTCTCATCGTCTTGCTAGTTGGAGATTCACCATGTCTGGATTATAGACTTCTGAACTGAGTGGGCTTGGAGAGTTAACGGGTAAAACATATTCCTCTACCATGTTCTCTGTACTATGCGTCACTGCTCATTCCCTCCCACTAGTTCTCCGTTCTTCCTGCTTTCTCTTTGGCTGTTTGGTTGGCAGAGCGGAATTTAATACGGCAGATTTCTAGAGTGATTCCCGTGACCTCTCGCTTCATGGATGGACGTCCTGTGATCGGAGTCATAAGTCCTGCATAAATGCCAAGGTTCCTACACAATAACAGGCTTTTGGATATCAGCGCTTACCCGAGCCTCCCTTATTTCTCGAAGACTTAAAACGTGAACAttatggagaaaaagaaaaggggaGAGACTAGGTTTGGGCGGAGGAGACTTAAGTGATCAACACTTGTAATGAAGAACCcacattgttttggttttttttgtttgtttttttttttctttgttgtttcttAGAGATGGAGGTTAAATGCCATCACCACTCCATCCTCTTGTTCTCTTTGGAGCTTTTTCCTggtcacactgaaaatctgaccAGGCACGTTGGACTAGTTCACTGTAAAGTCATCGAAATGATTTCCGCCTGTAAGTAAACTTATAAAGATGTATCGCAGAGAGAACTTTTGCATTTCAGACAGGACTGGATCGCTTAAAAACATGCCTGCATAGCGCGGAACGTCCATCTGAAGATTTATCTTGCAAATAGAATAAGGATAAATTACTTAATGGATATCCTCATGTTGACAAAAGGAATATCTTAAACATGTTTTATGTACACATTATGactactgctgtttttttttttttttttttttttttctttttttcttccccttgTGAGAATGGAAGTGATGTGTGGCTTACGCTGTCATTAACTGCAATTGTGACCATTCCTCTTTAACCAGTGTGATTCCTGCTGTGTTTATTACATCACCGCTGTTatgtaaaaccttttttttgtttcctgtcaACTCGGGCACATAGCAAGGTTGAAGTATTAAGCAGTCAGTGAGATTATACAAAATTTATTAAGGAAAGCcacaaaatgatcaaaattgTTTTTGTAAAGCTTATTTATGATGCCCTGTTCCATTCCTGTGGGGGGGAAATCTGTAACATGACCATtattgccttaaaaaaaaaaaaatccctttttaATGTCACTGTCCACACTGCAGATGTACCTATTTTACGACTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124618 lncRNA downstream 194751 26320032 ~ 26320770 (-) True G105379
TU124447 lncRNA downstream 427826 26087480 ~ 26087695 (-) True G105219
TU124309 lncRNA downstream 679483 25833279 ~ 25836038 (-) True G105092
TU123932 lncRNA downstream 1270277 25243472 ~ 25245244 (-) True G104750
TU124743 lncRNA upstream 50160 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 65300 26597434 ~ 26608339 (-) False LOC113526510
XR_004578319.1 lncRNA upstream 65882 26598016 ~ 26608327 (-) False LOC113526510
XR_004578317.1 lncRNA upstream 65883 26598017 ~ 26608327 (-) True LOC113526510
TU124742 lncRNA upstream 67399 26599533 ~ 26608329 (-) False LOC113526510
XM_026913597.2 mRNA downstream 50576 26324381 ~ 26464945 (-) False zgc:158464
XM_026913596.2 mRNA downstream 50577 26324381 ~ 26464944 (-) True zgc:158464
XM_026913600.2 mRNA downstream 50578 26324381 ~ 26464943 (-) False zgc:158464
XM_026913601.2 mRNA downstream 50583 26324381 ~ 26464938 (-) False zgc:158464
XM_026914215.2 mRNA downstream 222914 26194050 ~ 26292607 (-) False cd276
XM_034305136.1 mRNA upstream 135133 26667267 ~ 26691735 (-) True rec114
XM_026913543.2 mRNA upstream 148222 26680356 ~ 26691735 (-) False rec114
XM_034305137.1 mRNA upstream 148222 26680356 ~ 26691735 (-) False rec114
XM_026913542.2 mRNA upstream 148222 26680356 ~ 26691735 (-) False rec114
XM_026913390.2 mRNA upstream 294890 26827024 ~ 26847963 (-) True pkma
TU124615 other downstream 274516 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 966593 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other downstream 966593 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other downstream 1030400 25385325 ~ 25485121 (-) False si:cabz01090165.1
XR_003402792.2 other downstream 1752740 24752612 ~ 24762781 (-) False clasrp
TU124747 other upstream 36951 26569085 ~ 26608329 (-) False LOC113526510
TU125182 other upstream 620178 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 3170018 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3811397 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 4197824 30729958 ~ 30732031 (-) False bbs10

Expression Profile