RNA id: XM_026913597.2


Basic Information

Item Value
RNA id XM_026913597.2
length 2256
RNA type mRNA
GC content 0.57
exon number 7
gene id zgc:158464
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26324381 ~ 26464945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCAAGCTCGTTAAAGTTTGATTAGAGGGTTTGGAGGGTTAAGATGTTACAGAATTACAGTTTCAATCTGGCAACTCTGTTGGGAAAACTCACAGCAACCTGGCAACCTGGCGCGCAGAGAAACGTGGGCTGAGCGCTCGGCGACGCGCTCACACAGCCGGAGTTTCCACACACCAGAAAGTGATCGCGGGTCAGAAACGGGCGCGCGAGCTTGGACCGAGAAGTGTTGCGGATTAACCGAGTTTAACGCATACAGGGAGGCTCACGCGGAGCCACGGAAACCCGGAACGGAAACCTCGGCGTGTCGGAGCGGTGAGCGATGCGCTGGCACCATGGCCAAATGGTTCAAGGAGCACCTGGGATTCAAGAGCGCCAAAGCCTCGCCGCCGGCGCCTCCGAGACCGGACTACCGGCACTGCCACGCGGCCGCCGCAGCAGCTTACCAACACGCGGGCACTGGCACCGGAGGCGCGAGCTACCCGAGCCCCGCGCAGCCGGATATCCTCGCCGCGTACAAACTCCAGAAAGAGCTGGACTTCGAGGACCCGTACGCGGCCGGCGCCAACACTCCTTTCTCGGGCGCAGCGCTCTCGGAGGTGAAGTACGTGTCCCCGAAACACCGGCTCATCAAAGTGGAGACGCTGGAGAGGAGCTGCGCGAGCCCGAGTGCTGGCGGAGGCGGCGgcggaggtggtggtggtggcggCGGTGGCAGCGCGAGCCAGGCAGCTGCAGGGAGCGCGAGATCTCCCACATCCCCACCCGCCGAGCACGAGACTAAGCAGGACAAGGTGATCATCCTGGAGGACTACGCGGACCCTTTCGATGCTGCGGATCAAGCAGGTGGCACCCAGAGCAGTGTGGAGAAGCCGGTGGAGAACGATGGCTACATGGAGCCGTACGAGGCTCAGAAGATGATGGCTGAGATCCGAGGGAGTCGTGGTGTAAAGGACGGCCCAGCTCGGCAGCTTCCCTTGTACGACACCCCGTACGAGCCTGCGGAGAATGGTGGGGATTCGGACCCTCTATGTTCACGCGAGAGCAGACTGCCTCAGGATGATGAGAGGCCGCCGGAGGAGTACGATCAGCCCTGGGAGTGGAAGAAAGAACGCATCTCGAAGGCCTTCGCAGAGATTAAAGTGATAAAGGACCTCCCGTGGCCTCCTCCTGTTGGCCAGCTCAGCACTACGTCCCCCCTGGTGGAGGTGGTTgaggctcctcctgctcctcagCAGGCGTCCCAGCTCTCACCTGGACAGAGCGCCTCAGGCTGTGAGCAGCACCACCAGGTCCAGTTCGAGGGGGTGGAGAAAGGCAGGATGTCTCCGACGAAAGACGGGAAGTCGAGGCCACCCCAGCGCCACTCCAGCGGCTGCCTGGTCAACATGAAGATGAGTTCGGTGGAGCAGTGTATGCCGACACTGGGCGAGCGCATCGACCCCACCATGCCACTGGAGAGCcagttCTGGTATCACGGAGCAATCAGTCGAACGGACGCTGAGTCATTGCTGAGGTTGTGTAAAGAGGCCAGTTACCTAGTGAGAAACAGCGAGACCAGCAAGAACgacttctccctctctctcaaGAGCAGCCAGGGTTTCATGCATATGAAGCTGTCGCGAACCAAAGACAACAAGTACATCCTGGGCCAGAACAGCTGTCTGTTCGACAGCGTGCCGGAGATCATCCACTTCTACTCCAGCCGCAAGCTGCCAATCAAAGGAGCCGAGCACATGTCCCTCCTGTACCCCGTGGCCATCCGGACACTTTAGCCTCCAGTCTAGAAGTTGATCGGTGAACAAACGGCGTGTAGATGCCTGTTACAGATGGATTGAATATCCATCATCTGCATTTACAGCAGCATCTTATAATGTTTGATGACTGATATGGTGTGTGTTAAGCCTTTGTGAATGGCTGCTTGTACACAGTGCTACTGGAACACTCTCCAGCAGAGACTGGAAGACTTCAGAGGCTTTAAAAAAGCCCTCACCTTCCCACTGATGGTGTCAAATCTCAAGTCTTTTTTAATTTACGCCGAGTCATACCTTCAGCTCAGTGGATTATGGAGACCACACTGACCACACAAAGCAGACTAATCTGTAAATAATATGTTTTCCAGCAGCTCTATTGCGCACCCTCATCCCTTTCCGCTGACATTTCCTGTTCATGTGGACTTAAAACCCTGAGCTTTGGCCTGCACCCACACTTTGATTGTTTGGTCTCATGCATACTGTAATAAAATCTCACGCAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124618 lncRNA downstream 3611 26320032 ~ 26320770 (-) True G105379
TU124447 lncRNA downstream 236686 26087480 ~ 26087695 (-) True G105219
TU124309 lncRNA downstream 488343 25833279 ~ 25836038 (-) True G105092
TU123932 lncRNA downstream 1079137 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA downstream 1080364 25243472 ~ 25244017 (-) False G104750
TU124743 lncRNA upstream 117349 26582294 ~ 26608329 (-) False LOC113526510
XR_004578318.1 lncRNA upstream 132489 26597434 ~ 26608339 (-) False LOC113526510
XR_004578319.1 lncRNA upstream 133071 26598016 ~ 26608327 (-) False LOC113526510
XR_004578317.1 lncRNA upstream 133072 26598017 ~ 26608327 (-) True LOC113526510
TU124742 lncRNA upstream 134588 26599533 ~ 26608329 (-) False LOC113526510
XM_026914215.2 mRNA downstream 31774 26194050 ~ 26292607 (-) False cd276
XM_026914216.2 mRNA downstream 31774 26206949 ~ 26292607 (-) True cd276
XM_026913764.2 mRNA downstream 419041 25890299 ~ 25905340 (-) True loxl1
XM_034305190.1 mRNA downstream 454110 25839470 ~ 25870271 (-) True LOC113526366
XM_026913264.2 mRNA downstream 775453 25385325 ~ 25548928 (-) False si:cabz01090165.1
XM_026913357.2 mRNA upstream 50576 26515521 ~ 26532135 (-) True ube2q1
XM_026913358.2 mRNA upstream 50576 26515521 ~ 26532134 (-) False ube2q1
XM_034305136.1 mRNA upstream 202322 26667267 ~ 26691735 (-) True rec114
XM_026913543.2 mRNA upstream 215411 26680356 ~ 26691735 (-) False rec114
XM_034305137.1 mRNA upstream 215411 26680356 ~ 26691735 (-) False rec114
TU124615 other downstream 83376 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 775453 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other downstream 775453 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other downstream 839260 25385325 ~ 25485121 (-) False si:cabz01090165.1
XR_003402792.2 other downstream 1561600 24752612 ~ 24762781 (-) False clasrp
TU124747 other upstream 104140 26569085 ~ 26608329 (-) False LOC113526510
TU125182 other upstream 687367 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 3237207 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3878586 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 4265013 30729958 ~ 30732031 (-) False bbs10

Expression Profile