RNA id: XM_026913625.2


Basic Information

Item Value
RNA id XM_026913625.2
length 4236
RNA type mRNA
GC content 0.52
exon number 21
gene id kifc3
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23877707 ~ 23926937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGGACACGAGGACAGTGGATTATCTAAATGAGTATTAGGAGCAGCTCCGTTCTGATGTCACGCCACACTCTCAGTGAGAGCTTACAGGCGATTTGGTTGTTGAAACCTAGAGAATGGATTTACAGTAGGAGAAAAGTAGATATATTGCTGGAGTGAACTTTCTTTGGACTGAACAAAAGAGAAGAGCTTTATTAGACATTGATCTCTGTGGCTTTGAGGTGTTGTTCATGTTTCACTCCAGGCTTTCTGACTGAACACCAAGGTCGCCAACGCAACAGCTGATATTACAGACAGCTGTAACACGCACCAGAAGATAGCATTACAGTCTCCCTGTGTAGCAGGAACAGGTTGAATGTCCCCCAGAGGACTCAGTGTGCAACTGGGTGTTACAGAAAACCTGAAAGTGCTTTGTGCTAGTCGCTGAGATCATGTACGTGCTgtccacactgctgctgctgtccaTCCACAGCCTGCTGAAAAGAGAGAAGGCTGTGGACCTTCATGAAGCCAAGGCAGCAGAGTACAGTGAGAAACCGAGCAAAAAATCACCCTATACACAGCGCAGGAAAGTGGGAAATCCTGTCAGGGGCGGAAACCAGGGCCGACGCATGTCATGCAGCACCACCCAGCTGGAGGTACCTGAGTGCAGGAAGAGAGCCCAGCGGTACGCTCTGCTTGGCCCGGCGGTCATGTTTGGCACAAGGAAGACGTGGGACCTCGGCCACACCCCCTGCCTGCAGGAGCTCTGGAACAAAGACCTCTCATTGGACGCAAGCTCAGTGGATTTCCTGATCAGCGATGGTGAGGAGGAAAGCTCCTTCCTGACGCTGCCAAACTCAGTCCTCCAACGCCGCCGTTTGACCTCGGACCTCTCCGATCCCACCCTCTCTGACCAGCAGCTGCTCATACAGGCTcttcaagagaaagtgtgtgaattCCAAGCTCGTTTGCGTAGCGAAGACGCCACCGACAGGCGGCTTCTACACCGACTACACGCACCGCAGGTCAGTCAAGACCAACAGAACAAAGCAGACACAAGCCAAGAGCATCCACTCACCAATCAAGAGATTCTCGAACAGGACAGCCAGCTCAGCCAAGCTGGCTTCAACACAAGTGTACGGCGATTGAGTGCAGGATCCCAGCATCCACAGGATTATTCTGACATTGCTGCAGAGAGGAAAGTTCACGCACAGCCTCGGCATAAAGAAGAAGTGCACCAGCTTGCTCTCATCACAGGGCTGCACACACAGATTGAGGAGCTGGAGAAGAAACTGGTGGACCGGACTCAGGAGGTGGAGAGACTGCGCTCTGAGCTGgggGCGACAGACCTGGAGAAGCAGCTGGAGCTCCTAGAGAGCGAGAATCAGCGGCTCAGACAGGAGCTTAAGTCCAGCAGCATCCATGAGCCTGCACACACCTGCTCCACCTCCACCTGCCCTCACAGCCagGAGGCAGCGGCCCTACGAGGGGCACTCTCCTTGTGTGAGGAGCGCTGTAAGGAGTATGAGCGGCACATGGCAGAGCTCGAGCATCAGCTTGGGGAAAGAGCGGGCGCAGTGGACGAGCTGCATGTGCAACTGGAGGAGGCCTTACAGAGCCGAGACAAGCTTCAAGAGCAGCTCGCTCACACAGAGGAAATACTGCGACGGCACAGTGCAGCAGCGCCATCTCAGGCCATGGCAGCAGAGGCTGAGTCATCTCAGTGGAAACAGGCTCTGATGGAGGCTCAGGCGCGTAACCAGGCTCTCCAGGAGCAGCTGGGGGTCCAGCGGCAGCTCCTCCGAGAGCTCGAGCAGAAGCTGCACGACAGCCAGAGAACCAGCAGCGAGCTTCGCCAGCAGATCCTGGCATATGAGGGTGAGATGGAGCGAACACGAAGCCAGCTAGAGGCAGAGATTCAGAATCTTGAGGAGGAGAAGAACAGGGTCATCGAGGAGGCGTTCATCAGAGCCGAGAGCGAAATGAAAGCTGTACATGAAAACCTTGCAGGTGTAAGGATGAATTTGCTGACTCTGCAGCCTGCTCTGAGGACACTTACATGTGACTACAACTGTCTGAAGAGGCAGGTCCTGGACTTCCCTTACATGCTGCAGAATGCTATTGCTGAGGCTAAGCAGGAGATATGCCACATGATTGCAGAGGTGAGCAACACCAACCAGGAGCTGCTACGCAAATACAAGCGGGAGATGAACCTGAGGAAGAAGTGCCACAACGAACTGGTTCGCCTCAAAGGAAACATCCGTGTGTTCTGTCGCGTGCGTCCCATCTGCCAGGAGGAAGCGGAGGCTGACAGCAAGTGTGTGGTGTCCTTTGACTCTGACGACGATGCAGTGCTCTACCTTTCCAGCAAGGGCAAGCTTATGACCTTTGACATGGACAAGGTCTTCCCACCTCAGGCCACGCAGGCAGAGGTGTTTCAGGAAGTGCAGTCTCTGGTCACATCCTGCATAGACGGCTATAACGTGTGCATCTTTGCTTATGGGCAGACAGGTTCAGGAAAAACCTACACCATGGAGGGTATTCCTCAGGACCCCGGCATTAACCAGCGAGCTCTGCGTCTGCTCTTCTCTGAGGTGTCTGAGAAAATGCCTGACTGGCACTACACcatcactgtcagcatggtggaGATCTACAAcgagacactgagGAACCTGTTAGGAGACAACCCAAGTGAGAAGCTGGACATTAAGTTGTGTCCGGATGGCAGCGGTCAACTGTATGTGCCTGGTCTCACCGAGTTCACGGTGGAGAGTGTGGAGGATATAAATAAGGTTTTTGAGCTGGGTCACATGAACAGGGCGACAGCATGTACCAACCTGAATGAGCACAGCTCTCGCTCTCATGCTCTCCTCATCGTTAATGTGGCCGGCTTCAACTCCTCCACAGGACACCGCACCTCAGGTAAGCTGAATCTGGTGGATCTGGCTGGTTCAGAGAGAATATCTAAATCTGGCGCTGAGGGAAGCCGCCTGCGTGAGGCTCAGTGCATCAATAAGTCGCTCTCGGCGCTGGGTGACGTCATCAACGCGCTGCGTTCGCGCCACTCACACGTTCCCTTCAGAAACTCACGCCTCACGTACCTGCTGCAGGACTCGCTCAGCGGAGACAGCAAGACACTCATGCtggtccagGTGTCTCCTCTAGAGAGCAATATCATTGAGTCTGTATGCTCTCTGAAGTTTGCCCAACGTGTTCGCACAGTTGAGCTTGGACCGGCCTCCTCCTCACGAAGACATGCTGAGAACTCTTCAACATCCTCCTCACCTACCCACGACAGCGTGGAgTTGGACTCTCCACCCGTAACTCCCGTGCCCTTACCCATCTCCCGGGCAAGCAGTGTGggctcttctctctcctctatctCCAGAGTCTCCAGCACACGGAGAAGATCCCAGAGCCAGCAAGCTCCAGGACGAATGAAGCTTGCCAcatgatgatatgatgaagcGAGTGTGCTGATAAACTGCCTTTCAGCATGCTCCACCCAGAGTTTATTTTACCCGGGGACAGGGAAGAACCAAACTGGCAAATCAGGGATATGTACAGCATTTCTGTGAGAGACTTGAATGTTCTGTTGGTGACTGAAGAATCTGGCGTTCCCTCCGAGCCCTTTCCTGCCTTGGGGACACGAAGACAGTGTTTGTGGACGTCTATGCACTTTAGAATACGCTGATCTGATTATTCATGGTGTTAAAAACCCAGTCAAGCTTAGGACTATCACATGACTGGCATTGATCTTTAAGTATGtgtgttctttctcttttttgagagaaaaatgctggtgtattcttttttttttgcttccacaATGCACCGTCCTTTTTATTCAAAGCCTAAGAACAAAGTCGTACTTACGAAAACTTGTGTAGCAGTCGCAGTAAGCAATAACGAAGGCCGAATCTAGCCTGTCTCTGTTAGTGGTCACGTtcttgttgtgtatgtttggtATCCTGAAGGCAGCATATTGAAGTCTTCCTGATTACGCATGTATACTTTCAATTTTGTCATCAGCGGTGGACTTACTCATTCCACATTGCTGTGAATAGGAATGCTTTGAATTTTCACCCACATTCAGAAATGCATTTCCACTGTATGAAATTTTTCATCTGAAATGGACCACTGAGAGAGAACGGATGTTGGTGGCTGTGGGGTTTTGCTAGCTTCAGTTCATTTTACCATAGCTTTGTATGCATCCttgtttttgtacactttttaataaatatcttaAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123014 lncRNA downstream 138968 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA downstream 138968 23732870 ~ 23738739 (-) False rpl35a
TU123026 lncRNA downstream 178018 23648684 ~ 23699689 (-) False rnpepl1
TU122848 lncRNA downstream 302028 23572589 ~ 23575679 (-) True G103820
TU122845 lncRNA downstream 364379 23512157 ~ 23513328 (-) True G103817
TU123411 lncRNA upstream 501637 24414900 ~ 24464578 (-) True G104291
TU123423 lncRNA upstream 567098 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA upstream 567128 24480391 ~ 24484072 (-) False sipa1l3
TU123452 lncRNA upstream 620474 24533737 ~ 24534419 (-) True G104320
TU123618 lncRNA upstream 718395 24631658 ~ 24661348 (-) False ttc9b
XM_026913297.2 mRNA downstream 34235 23835172 ~ 23843472 (-) True eif3m
XM_034305496.1 mRNA downstream 50863 23816683 ~ 23826844 (-) False prrg4
XM_026914413.2 mRNA downstream 51056 23816783 ~ 23826651 (-) True prrg4
XM_026913758.2 mRNA downstream 61794 23794190 ~ 23815913 (-) True qser1
XM_026913498.2 mRNA downstream 96314 23765537 ~ 23781393 (-) False depdc7a
XM_034304981.1 mRNA upstream 19635 23932898 ~ 23974188 (-) True cngb1a
XM_026914045.2 mRNA upstream 222115 24135378 ~ 24269595 (-) False large2
XM_026914044.2 mRNA upstream 222115 24135378 ~ 24212972 (-) False large2
XM_034305390.1 mRNA upstream 222115 24135378 ~ 24212972 (-) True large2
XM_026914043.2 mRNA upstream 222115 24135378 ~ 24174644 (-) False large2
XR_004578330.1 other downstream 267259 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 1570938 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2864607 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2910797 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3897448 19980069 ~ 19980259 (-) True LOC113527007
TU123617 other upstream 710253 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 839349 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 1472062 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 1472062 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 1472062 25385325 ~ 25485121 (-) False si:cabz01090165.1

Expression Profile