RNA id: XM_026914196.2


Basic Information

Item Value
RNA id XM_026914196.2
length 1579
RNA type mRNA
GC content 0.54
exon number 11
gene id wash1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27546497 ~ 27557970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAGTTATAATCTTCTGTCATGTGACCAAGGGACGCGGAAGTTTTGATCTGGAAGACCTGTGCAGCTTCTTCAGTCTGTGATGCGAGGAAAGAAAATCGTCTTGTTTTAAAGTTTAGAGCTCGACTTTCTAAATGGGCAGgatgactCAGAAGCACCACCTGGAGGGCCAGGTCTATTCTGTGCCACTGATCCAGCAGGACCTGCGGAGGGAAGAGGCCATGCACCAGATCACTGATGCCCTGCAGTACCTGGAAAATATCTCGACTGATATCTTCAGCAGGGTGTCTCAGAGTGTGGAGAGGAACCGTGCTCACCTTCAGGCCGTCACTGACCGCATTAAACTGGCTCAAGCTCGAGTTCAAAAGATTAAAGGAAGCAAGAAAGCCACCAAGgtgttttCCAGTGCTAAATATCCTGCTCCTGAGAAACTTCAGGATTATTCTTCCATATTTACGGGTGCTGTAGATCCAGCATCTCAGAAACGACCTCGCTACAAAGTTCAGggcaagctccgccccctggaTGACAAGGCCTTACAGGAGAAGTTGATGTATTTTCCAGTCTGTGTGAACACTAAGAAGCGCTCAGAGGATGAGACGGAGGAGGGACTGGGGAGTCTGCCAAGAAACATCAGCTCCGTCAGCTCTCTGCTGCTCTTTAACACCACAGAGAACCTGTATAAGAAGTACGTGTTCCTGGATCCTCTGGCGGGAGTCGTCACTAAAACCCACAACACActagagacagagaaggaggaAAAGCCGTTTGACGCGCCACTGTCTATCACTAAACGAGAGCAACtagagagacagactgCAGAGAATTATTTCTATGTGCCAGACCTGGGGCAAGTGCCCGAGATCGATGTGCCCTCTTATCTGCCCGACCTGCCTGGCATCGCTGATGACCTCATGTACAGCGCTGACCTCGGCCCAGGCTTCGCCCCTTCTGGTGCTGGCAATGCGACCATGCCAGAGCTGCCCTCTTTTGGCACAGAACAGGAAGAAGGCTCCCAGTTTCGATCCGAggctcctcctccacctccgcctccacctcctccacccccTCCTCCTGAGTCTCCTCAGGTTACAGCTCCTCCCCTTGGAGCTCCTCCAGccccgcctcctcctcctccaccgcCTCCCGCTGTTCCAGATGACACAGGTGGCGGAGGTGTGTCCAGTCATGCCCCGCCCACAGgtgcaGTAAAAGGTGCCCCTACAGAGGTTCTGCAGCCGTCGGATGGGCGAGCCAGCTTGCTCGAGTCTATTCGTAACGCTGGCGGCATCGGTAAAGCCAAACTGCGCAATGTTAAAGAGCGAAAGatggagaagaagaaacagaaggagCAGGAGCAAGTTGGAGCAGCAGCCAGTGGAGGAGATTTCATGTCCGATCTCTTTAATAAATTGGCCATGCGGAGGAAAGGTATCTCAGGTAAAGTCCCAGGAGGCGGAGACGCGGCAGAACCGCCTGGCAGCTCCGGCAGCGCGTTCGCCAGAATGTCAGACGTGATCCCGCCCCTTCCTGCTCCTCAACAGCCAACTGCGGAGGACGACGATGACTGGGAGGCGTAG

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402778.1 lncRNA downstream 357705 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 401623 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 417325 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 438926 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 670663 26875595 ~ 26875834 (-) True G105666
TU125590 lncRNA upstream 221162 27779132 ~ 27781800 (-) True G106193
TU125592 lncRNA upstream 303870 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 386846 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 395548 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 396294 27954264 ~ 27954479 (-) True G106260
XM_026914424.2 mRNA downstream 21981 27515680 ~ 27524516 (-) True fkbp4
XM_026913504.2 mRNA downstream 166949 27376837 ~ 27379548 (-) False LOC113526458
XM_026913503.2 mRNA downstream 166949 27376837 ~ 27379548 (-) True LOC113526458
XM_026914124.2 mRNA downstream 231697 27311961 ~ 27314800 (-) True LOC113526781
XM_026914279.2 mRNA downstream 242767 27298985 ~ 27303730 (-) True LOC113526860
XM_026914021.2 mRNA upstream 44256 27602226 ~ 27658837 (-) False ptprq
XM_026914020.2 mRNA upstream 44256 27602226 ~ 27658837 (-) False ptprq
XM_026914019.2 mRNA upstream 44256 27602226 ~ 27658837 (-) False ptprq
XM_026914018.2 mRNA upstream 44256 27602226 ~ 27658837 (-) True ptprq
XM_034304991.1 mRNA upstream 104438 27662408 ~ 27708771 (-) True otogl
TU125182 other downstream 389357 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 938168 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1305492 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 1997569 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 2144182 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2785561 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3171988 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3258609 30816579 ~ 30819614 (-) True G107803

Expression Profile