RNA id: XM_026914384.2



Basic Information


Item Value
RNA id XM_026914384.2
length 853
RNA type mRNA
GC content 0.43
exon number 4
gene id fbxo36a
representative True

Chromosome Information


Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20566740 ~ 20572429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TCCAAAATGGCGTCCCTGCTGCCCGAGTTACTGTTTGAGACCAGCGGTCAGGCGCCTTCTCCCTCTAAAGATTTCTATCAGCTCGCTGTAACAAAAACAGAGgtTATATGGAGGTGGTGGAAGATTTCTCTCCGTATCCAGTTGCAAGGCACGTTGCCCGGGGAAATGAAACAGAGTCATGTGGATTTTCTAAATGATGCCAGACTACAACaGCAAGTTGGTGTGGTGTTTGGGTCACAGTTACTGGAGTACACACTTGGCCTCTGTGAAGGGAGGTTTGATTATCTGGAGCGTTTGCCTGATAAGCTGCTGCTGCGTATTCTTTCCTATCTGAGCCACCAGGACATTTGCCACCTCAGCCAGACCTCACACCATTTCAGGAAGcTGTGTGACTCTAAAGAATTATGGGAACAGGCAGTGCGGCAAGGCGGTAATGAAATCACACCCGAAATAGAGATGCTGGCCAACAAGTTCGGCTGGAGGAGGATCTACATGACTTTCTATCATAATAAAGCCCAGCatggcagtgagacagacatAGACATCGAAATGGATGAAGATAAGGACAAAGATGAACCACATGAATCCCTTTAAACATGGCTCTTAGAAGCAGTTTATTAATCTCTGTGATAAATTATTGTTCTTATGTTTGCAATGTTATCATTAATGAACTTTCTTGACACGCTTGTTCCCcaactgtgtgtttgtcagaTGTGGAACACAATGTAATTACACAGCCTTTAGAGATGATTGATTGTAATGATCTAATACTTGTTCTCAGTCGCTTACATACATTTCAGAAAACAGTTTCTCTGCTTCCAAGCATTCTAGTATATTTCTCAAAACTATACAC

Function


GO: NA

KEGG:

id description
K10312 FBXO36; F-box protein 36

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121286 lncRNA downstream 70439 20494257 ~ 20496301 (-) True G102453
TU121282 lncRNA downstream 88184 20478333 ~ 20478556 (-) True G102449
TU121277 lncRNA downstream 93995 20471871 ~ 20472745 (-) True G102444
TU121262 lncRNA downstream 152212 20395869 ~ 20414528 (-) False akt2
TU121267 lncRNA downstream 207199 20358215 ~ 20359541 (-) True G102434
TU121318 lncRNA upstream 6261 20578690 ~ 20581168 (-) True G102472
TU121291 lncRNA upstream 66442 20638871 ~ 20686185 (-) True G102458
TU121483 lncRNA upstream 423096 20995525 ~ 21003780 (-) True G102600
TU121581 lncRNA upstream 550886 21123315 ~ 21124955 (-) True G102691
TU121721 lncRNA upstream 736874 21309303 ~ 21312468 (-) True G102809
XM_034305003.1 mRNA downstream 2659 20541643 ~ 20564081 (-) False zbtb38
XM_034305004.1 mRNA downstream 2659 20541643 ~ 20564081 (-) False zbtb38
XM_034305005.1 mRNA downstream 2659 20541643 ~ 20564081 (-) False zbtb38
XM_034305001.1 mRNA downstream 2659 20541643 ~ 20564081 (-) True zbtb38
XM_026914270.2 mRNA downstream 5441 20541643 ~ 20561299 (-) False zbtb38
XM_026914094.2 mRNA upstream 248377 20820806 ~ 20845204 (-) True daw1
XM_034305343.1 mRNA upstream 248377 20820806 ~ 20839918 (-) False daw1
XM_026914093.2 mRNA upstream 248377 20820806 ~ 20839918 (-) False daw1
XM_026914095.2 mRNA upstream 248377 20820806 ~ 20837129 (-) False daw1
XM_026913549.2 mRNA upstream 352549 20924978 ~ 20929950 (-) False LOC113526481
XR_003402829.1 other downstream 586481 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1215797 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2369934 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2479769 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5212103 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 381173 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 422912 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1662274 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3018516 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4051087 24623516 ~ 24711368 (-) True G104473

Expression Profile