Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578368.1 |
| length | 160 |
| RNA type | ncRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC117597604 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 18086655 ~ 18086971 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578367.1 | lncRNA | downstream | 234595 | 17847025 ~ 17852060 (-) | True | LOC113537962 |
| XR_003403807.2 | lncRNA | downstream | 234595 | 17849640 ~ 17852060 (-) | False | LOC113537962 |
| TU119436 | lncRNA | downstream | 368627 | 17717351 ~ 17718028 (-) | True | G100771 |
| TU119430 | lncRNA | downstream | 482997 | 17603229 ~ 17603658 (-) | True | G100765 |
| TU119429 | lncRNA | downstream | 483885 | 17598489 ~ 17602770 (-) | True | G100764 |
| XR_004578371.1 | lncRNA | upstream | 77028 | 18163999 ~ 18167769 (-) | False | LOC117597605 |
| XR_004578369.1 | lncRNA | upstream | 77028 | 18163999 ~ 18167769 (-) | True | LOC117597605 |
| TU120068 | lncRNA | upstream | 438514 | 18525485 ~ 18528714 (-) | True | G101383 |
| TU120090 | lncRNA | upstream | 464470 | 18551441 ~ 18551725 (-) | True | G101405 |
| TU120091 | lncRNA | upstream | 464946 | 18551917 ~ 18552203 (-) | True | G101406 |
| XM_034305437.1 | mRNA | downstream | 361335 | 17720545 ~ 17725320 (-) | True | LOC117597582 |
| XM_034305438.1 | mRNA | downstream | 361340 | 17720545 ~ 17725315 (-) | False | LOC117597582 |
| XM_034305182.1 | mRNA | downstream | 608370 | 17423449 ~ 17478285 (-) | False | alpk3a |
| XM_034305181.1 | mRNA | downstream | 608372 | 17422361 ~ 17478283 (-) | True | alpk3a |
| XM_034305183.1 | mRNA | downstream | 609047 | 17422361 ~ 17477608 (-) | False | alpk3a |
| XM_026932720.2 | mRNA | upstream | 195648 | 18282619 ~ 18524226 (-) | False | rasgrf1 |
| XM_034305502.1 | mRNA | upstream | 195648 | 18282619 ~ 18524226 (-) | True | rasgrf1 |
| XM_034305503.1 | mRNA | upstream | 195648 | 18282619 ~ 18509549 (-) | False | rasgrf1 |
| XM_034305505.1 | mRNA | upstream | 195648 | 18282619 ~ 18509400 (-) | False | rasgrf1 |
| XM_034305504.1 | mRNA | upstream | 195648 | 18282619 ~ 18486829 (-) | False | rasgrf1 |
| TU118530 | other | downstream | 2732018 | 15347166 ~ 15354637 (-) | True | tmem170a |
| XR_003403523.2 | other | downstream | 3739647 | 14335936 ~ 14347008 (-) | False | dennd11 |
| XR_003403533.2 | other | downstream | 4297808 | 13788751 ~ 13788847 (-) | True | LOC113534839 |
| XR_003403534.1 | other | downstream | 4298456 | 13788102 ~ 13788199 (-) | True | LOC113534840 |
| XR_003403537.1 | other | downstream | 4298869 | 13787657 ~ 13787786 (-) | True | LOC113534844 |
| TU119855 | other | upstream | 100476 | 18187447 ~ 18196806 (-) | True | G101178 |
| XR_003402833.1 | other | upstream | 1263791 | 19350762 ~ 19350943 (-) | True | LOC113527011 |
| XR_003402829.1 | other | upstream | 1893098 | 19980069 ~ 19980259 (-) | True | LOC113527007 |
| TU121422 | other | upstream | 2866631 | 20953602 ~ 20966910 (-) | True | G102566 |
| XR_004578325.1 | other | upstream | 2908370 | 20995341 ~ 21013100 (-) | False | sertad3 |
