RNA id: XM_034305503.1


Basic Information

Item Value
RNA id XM_034305503.1
length 4209
RNA type mRNA
GC content 0.46
exon number 27
gene id rasgrf1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18282619 ~ 18524226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTAGTCAAGCACTCAGACTCCAAACCTGCAGGGGGCAGCGAGAACTGGATGCTAGTATGCTGCTTCCTGTAGAAGCTTCAACACCTGCATACCTGCATGGGAAATGTTTGAGAACAAAGGAATCACACTGGCAACAAACAAGCAAGAGAATCATACTGGCTTTTTCAACCAAGCaactaaaacacaaaagaaCTCCGCTCGTGGATCAACTACTGAAGACGCAACTGtATTATTTCACAATCAGCTTCAACCATGAAAATCAGAAAGCTCTTGAGCTTCGCACTGAAGATGTGAAGGACTGCGATGAGTGGGTAGCAGCAATAACACATGCCAGCTACAGAAACCTGGCCACAGAGCATGAGACTTTAATGCAGAAGTATCTCCATCTGCTCCAAATCGTGGAGACCGAGAAAACAGTTGCTAAGCAACTTCGACAACAGATAGAGGATGGGGAGATTGAAATTGAACGCTTAAAGTCTGAGATTGCTGGACTGCTTAAAGACAACGAGAAGATCCAATCTAACCCCACCATTGCTCCCAGTGAAGATGACTCTGAAATCAAGAAAATCAAGAAGGTACAGAGTTTCTTGCGTGGTTGGATGTGTCGGAGGAAGTGGAAAACCATTATCCAGGATTACATTCGCTCACCACATGCTGAAAGCATGAGGAAGAGAAACCAGGTGGTATTTAGCATGCTGGAAGCCGAGGCTGAGTACGTCCAGCAGCTCCACATCCTTGTCAACAATTTCCTTAGACCACTCCGTATGGCTGCCAGTTCCAAGAAGCCACCCATCACTCATGATGACGTCAGCAGCATTTTTCTCAACAGTGAAACCATCATGTTTTTACACCAGATATTCTATCAAGGCCTGAAAGCACGAATAGCAAGCTGGCCAACATTAGTATTAGCTGACCTCTTTGACATTCTCCTGCCCATGCTGAACATCTACCAGGAGTTTGTTCGCAATCACCAGTACAGCCTGCAGATCCTGGCACACTGCAAACAGAACCGTGATTTTGACAAGCTGCTGAAGCAGTATGAGTCCAAGCCTGACTGTGAGGAGCGCACGCTGGAGACCTTTCTCACGTATCCCATGTTCCAGATACCACGCTACATTTTGACTCTCCATGAGCTGTTGGCACACACACCTCATGAACATGTGGAGAGGAATAGTTTGGAATATGCTAAGTCCAAGCTGGAGGAGCTTTCCAGAATCATGCACGATGAAGTAAGTGAAACAGAGAACATCAGGAAGAACCTGGCCATTGAGCGCATGATCGTGGAGGGCTGTGAGATTCTCCTGGATACTAGCCAGACTTTTGTCAGACAAGGATCACTTATCCAGGTGCCCATGAGTGAGAAAGGGAAGATCACCCGTGGCCGTTTGGGCTCCTTGTCTCTGAAGAAAGAGGGCGAGAgacagtgttttcttttctctaaaCACCTCATCATCTGTACCAGGGGCTCTGGGGGGAAGCTGCACCTCACCAAGAATGGAGTGGTTTCGCTTATTGACTGCACATTGATTGAGGACCCTGAAAGCACAGATGATGAGCCAAAATCAGACAAGAACAGCCAAGATATGGAGCACCTGGACTTTAAAATAGTGGTGGAGCCTAAAGACAGCCAATCCTTCACCATCATCCTAGTTGCCTCCTCAAGGCAAGAGAAGTCAGCCTGGACCAGTGACATCAGCCAGTGCATTGACAACATTCGTTGCAATGGCCTTATGATGAATGCTTTTGAGGACAACTCAAAAGTCACTGTCCCACAGATGATCAAATCTGATGCCAGTCTTTACTGCGATGACGTGGACATCCGCTTCAGTAAGATGATGAACTCATGCAAAGTGTTGCAGATCCGCTATGCCAGTGTGGAGCGGTTATTGGAGCGGCTGACTGACCTGCGCTTCCTGTCTATTGACTTTCTCAACACCTTTTTGCACTCGTACCGCGTCTTTACCACTGCAGATGTTGTACTCGACAAGCTCATTGCCATCTACAAGAGGCCCATCAGTGCCATCCCAGCTCGCTCTTTAGAGCTGTTCTTCGCCAGCAGCCAGAATACTAAGCTGCTATATGGTGAACCACCCAAGTCACCCCGTGCCAGCCGTAAGTTCTCCTCACCTCCTCCACTGGCCCTTGGCAAGACATCGTCTCCAAACAGGCGCCGCAAGCTCTCACTCAACATCCCCATCATCACAGGCGGCAAGGCACTGGACCTTGCTGCACTTACTTGTTCCTCCAATGGATATGCCAGCATGTACTCAGCCATTACACCATTCAGCAAGACCACACTGGATATCAACAAGCTCTATGTGTCCAGCCCTATCACCAGCAAGATCAGTGATGAGGCTGAGGGCAAATCTGAGCGAGCAGAGGAGCCCTCCCTTGGTAAacaggATATTTCGGTGAGGGAGGAAAGTGACAGCGAGCAGGTCCAGAGTGATGAGGCAGATGCAGAAGCTTCACCCACCAAATCACCTACAACGCCAAAAACTGTCAAATGCAAAGCCTCTTCAGATTTCTCCCTGTTCTCATACAATAATGgcatgatgatgtcatcttgCCGAGAAATAGACAACAACCGCAGTGCACTTTCGGCAGCATCTGCTTTTGCTATTGCCACCGCTGGTGCCAATGAGGGCACACCAACCAAGGAGAAGTACCGCCGCATGTCCTTGGCTAGCACAGGATTCCCTACAGACCAGAGGAATGGAGATAAGGAGTTTGTGATTCGCCGGGCAGCAACTAACCGAGTACTTAATGTCCTAAGGCACTGGGTGTCCAAACATTCCCAGGACTTTGAGACCaacacagaattaaaaatgaatgtgatcTGCTTCTTGGAGGAAGTTATGCATGACCCTGAGCTGCTGACTCAGGAAAGAAAAGCAGCAGCCAACATCATAAGGACGCTTACACAGGAGGACCCTGGTGACAATCAGATCGCTCTGGAAGATGTACTAAAGATGGCTGAGAGTGGGAAAGCAGAACCCTTTGAGAACCACTCGGCTTTGGAGATTGCAGAGCAGCTCACCCTGCTGGACCACCTGGTTTTCAAAGTCATCCCATATGAGGAGTTCTTTGGCCAAGGATGGATgaagaatgacaaaaatgaaaagacacCCTACATCATGACAACAACGAAGCATTTCAATGATATAAGCAACTTGATCGCATCGGAGATCCTGCGCTGCGATGACGTGAACACTCGGGTGGCCGTGATGGAGAAGTGGGTGGCAGTAGCTGACATCTGTCGCTGTCTCCATAACTATAACGCTGTGCTGGAGATAACCTCATCCCTCAACCGCAGCGCCATTTTCCGCCTCAAGAAGACCTGGCTCAAAGTTTCCAAACAGACCAAAACAGTTATTGACAAGCTGCAGAAGTTGGTCTCATCTGAAGGAAGGTTCAAGAACCTAAGAGAagctttaaaaaaTTGTGATCCTCCATGTGTGCCATACTTGGGGATGTACCTCACAGACCTGGCATTCATTGAGGAGGGTACACCAAACTACACAGAAGACAACCTGGTTAACTTTTCCAAGATGAGAATGATCTCCCATATCATCAGAGAAATACGTCAGTTTCAACAAACAGCATACAAGATTGATCATCAGCCAAAGGCAGCCCAGTATTTGCTAGACAGTAGCAACGTGTTGGATGAAGAAAGCATGTATGAAGCCTCACTCAGAATTGAGCCCAAAGTGCCCAACTGAGAAGAAGGCTTCTGTGAACTCAAACGGTTGTATAGCCCATCATGTATTCATACACAATATGTCTTAGGTTATATATTATGTGATATTGTTCCTGTATCAGTAACTTTTTATTTCTAGAAGTTAGTAAAGCACATAACCATTTTCAAATTATAGACGAGTTGCAGATCATGGTATGGTACTTCCCAgtaccaaaaagaaaaatatgtatacGCTCTGAGATCAATATCTATTCAAATGTTATTTGGGGTCTCTTTAGTGATTCAGGTCATACATAAATTTTGGTCCGCCCTTTGTTGCAAGTAATTATCAGATATAATTCTCTGATGCATTTCACAACAAGaagataaatatttttactaaaCCTGAAATTTTATAGACATCatgtaataatgaaaaacaagtGCATTGGACATTTTTACATAGGTGATATTCCATGACAGAAATAAACTAATGTcatatttaacaataaaaatatacacaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578371.1 lncRNA downstream 114850 18163999 ~ 18167769 (-) False LOC117597605
XR_004578369.1 lncRNA downstream 114850 18163999 ~ 18167769 (-) True LOC117597605
XR_004578367.1 lncRNA downstream 430559 17847025 ~ 17852060 (-) True LOC113537962
XR_003403807.2 lncRNA downstream 430559 17849640 ~ 17852060 (-) False LOC113537962
TU119436 lncRNA downstream 564591 17717351 ~ 17718028 (-) True G100771
TU120068 lncRNA upstream 15936 18525485 ~ 18528714 (-) True G101383
TU120090 lncRNA upstream 41892 18551441 ~ 18551725 (-) True G101405
TU120091 lncRNA upstream 42368 18551917 ~ 18552203 (-) True G101406
TU120093 lncRNA upstream 45327 18554876 ~ 18555193 (-) True G101408
TU120094 lncRNA upstream 49770 18559319 ~ 18559614 (-) True G101409
XM_034305437.1 mRNA downstream 557299 17720545 ~ 17725320 (-) True LOC117597582
XM_034305438.1 mRNA downstream 557304 17720545 ~ 17725315 (-) False LOC117597582
XM_034305182.1 mRNA downstream 804334 17423449 ~ 17478285 (-) False alpk3a
XM_034305181.1 mRNA downstream 804336 17422361 ~ 17478283 (-) True alpk3a
XM_034305183.1 mRNA downstream 805011 17422361 ~ 17477608 (-) False alpk3a
XM_034305474.1 mRNA upstream 224878 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA upstream 224878 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA upstream 224878 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA upstream 224878 18734427 ~ 18741724 (-) True znf710a
XM_026913714.2 mRNA upstream 800339 19309888 ~ 19333430 (-) True dhx34
TU119855 other downstream 85813 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 195648 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 2927982 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 3935611 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 4493772 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 841213 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 1470520 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 2444053 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 2485792 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 3725154 22234703 ~ 22306769 (-) False si

Expression Profile