RNA id: XM_026932412.2


Basic Information

Item Value
RNA id XM_026932412.2
length 3203
RNA type mRNA
GC content 0.46
exon number 5
gene id znf710a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18734427 ~ 18741724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGGTTTTTTGCTCCACACTTCACTTGAAGGATGAGAGCTTTGAAACACCTTAAACATCACTCCAGGAGCAATGTGGAGGAGCAGGCAGTTCCTCTGGTGCGCTGCTACAGTGAAGTGATGGGAAATGTGGTGGACACCGGCACACAGACTGATCCAGTGGTGGTCCTGTCCCTGGCTCAAGCTGCTGTGCTGGGCCTCATATCTCAGAATGAAATCTTTGGCACCACCATCGCCCCTAATGGCTTTTACACTGGAGAGGCACGTGACTGCCCCCCTCCACCTCCAGAGGCAATGGAGTATGAGTATTCAGACCAGTTGATTGGCGCAAATGGAGACTACCTACCTGAGCCCAATGGAGAAAACAGGAGGCCACATGGACTTTTGGGGGTGGAGAAAAAGCGTTCAGGACCTCGGGGAAAGGCCAAGAGGCACCAAAGTGAAAACGATGAGGCAGTAGAAATGGCTAAGAAATCCACAGATGTACAGACTTGGGTGAAAGGAGAGCGGCCTGAATATTCAAGCCCCTGTTACTACTCAAATGTTCATTGCAATGACAGTGAGTCTGAAGTGTTGGACCTTGCCCCCCACAGACTGACGTTAAAGGAGGAGCAAAATAAAGGCAGCCCTGAGCATGCAAAGGAGTCAAACAACCAGCAGAGTGATCCAGACTCAGACACAACTTCACAGGATGCTAATCACACACAGGAAATAGAAGCAGCCAGCCAGCCTGAGGGAGGAGGCACCAAAGAAGAGGGGCCAGATGAGCAAAGAGCACTGAATCTTAAGACTCCTGACGAGGAAGTGAGTCCTGCAATGAGAGGCTACTATGAATCTAGTGTTTTGACCTACGAAGCTGCTGAGCCAGATCTGACACCAGCAGAGTATGATGATGGTGGGCAGGTGGCGACATGGGCAGATGGTGAGAATCCTGCAGCCCGCCGTGTGCAGATTGACCGTCTGGACGTCAATGTGCAAATCGACGAGTCATACTGTGTGGATGTGGGTGAAGGCCTGAAGCGCTGGAAGTGCCGGATGTGTGAGAAGTCATACACATCAAAGTACAATTTGGTGACACACATCCTGGGTCACAGTGGGGTCAAGCCACATGAGTGCTTGCACTGTGGAAAACTGTTCAAGCAACCAAGCCACCTGCAGACACATCTGCTTACACACCAAGGCACAAGGCCACATAAGTGTACTGTGTGCAAGAAGGCCTTCACACAGACCAGCCACCTCAAGCGCCATATGCTGCAGCATAGTGACATCAAACCATACAGCTGCCGCTTCTGCGGACGTGGGTTCGCCTACCCCAGCGAGTTGCGCACACATGAGGCCAAGCACGAGAATGGGCGGTGTCATATTTGCACACAATGCACCATGGAATTCCCCACCTATGCCCACCTCAGGCGGCACCAGGTCAGTCACCAGGGGCCTGCCGCCTTTCAGTGTAGTGAGTGCCACAAGAGCTTTGCCTACAGGAGCCAGCTGCAGAACCACCTAATGAAGCACCAGAACACGCGGCCCCACATTTGTTCTGAGTGTGGCTTAGAGTTTGTGCAAGTTCACCACCTGAAGCAGcacctgctcacacacaagGTACTAGCACAGCAGGCCCTCAAACACAAGGGGATGAAAGAGTACAAATGTGACGTGTGTTCTCGTGAGTTCACCCTGTCAGCCAATCTGAAGCGGCACATGCTGATCCATACAAGTATGCGACCTTTCCAGTGCCACATCTGCTTTAAGACCTTCGTCCAGAAACAGACCCTCAAAACCCACATGATTGTCCACCTTCCCGTCAAACCCTTCAAATGCAAGGTGTGTGGGAAGTCATTTAATAGAATGTACAACCTACTTGGCCACATGCACCTTCATGCGGGTAGCAAGCCCTTCAAGTGCCCCTACTGCAGCAGCAAGTTCAACCTAAAGGGAAATCTTAGCAGGCATATGAAGGTGAAGCATGGCATTCTAGATGTCTTGCCAGATGGGCAAGATAGCCACCCTGATATGGAGGGCCAggaggactttgaggaagacagcTTTGACTACAGTGAAAGAGAAAATCTGGCTAGCAACAACACACAAGACCTGGCCAAACTTTCTGAGATGGGCTATTACAACTATACGAAGGCTACTGCTTACTACGCCACAGCATAATGCACTGTGAGACACTCAAACTCACCAATGGCCTGTTTTTGTAAGCCTCAAGGTTTTAACATGGACTAATGATGAAATGGCTGCCTGGTGGTTGTGCACTGGTATTTTGATTAATCTATAAGAGGAAATCACTTATATGCCTCCAAATCATTAGAGCTTGTTAGGTTCCATTTAAAAGCAAGTGTAATGCTATATTTAGGTGTCACACAGTGGGTAATAGGCTGAGGACATCAGCTGTATATTCCTTGTGGATAATGATCTAACACGATACTCCACTTCAGAAAGAATctttcaaaaataacatttctgagACTAATTCAAAATTGTCGTGCAGCAGTCTATACAGAGGCACTTAAGAGACAACCCTCAACCCTCTGGAAATATCCCTGACATGTAATGTTAAACCATCAAAGCttatacaaaaacattaaagatAAGGTAGAATAATAAATTGGatttaacataacataataaagTGATGAACAAAATGGTTTAGGAAAATCTTTACCATCATAAAAATGGTAGGATCTGGTTAACTAGCTTGTTCACTTCTAGTAAATCATTTGTCACATGTAAACCCAAATGGGATTTTAAGAGGAGGCTTGATGTCCACCTAATTATTTAACAACAGCCAAACCTGTCAAAATAAACTAGAATTATCAATACTATTTTGTTCAGTATTAtcattagctaaattagctagccATTTTAGCATATAGATTACGTGTCTAAAAGTTTCTAGGTACTGGTACCACATCATTCTTAAATATTGGATGTGATGAGTCCAAAGAAATGGGGCGTATTTAGTGGCATTGCTAACTGATACACAATGCTCCATGGTTCAGATTTTTAGGgaatttctgatttctgaaCATATGTGGTGTTGAAAAAAATTCTCAATTTATATAAACAGAATCAGGAGAAAGATGAGttacttaaaaatgttttcagggTAGGGGTgtgcgatatgacaaaaatgtcaCATCACGATTATgtctacaatacacaatatgcatCACGATGTgggtttgctcacaaactgcc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120153 lncRNA downstream 1598 18707918 ~ 18732829 (-) True G101467
TU120154 lncRNA downstream 1598 18730500 ~ 18732829 (-) False G101467
TU120157 lncRNA downstream 52702 18678731 ~ 18681725 (-) True G101469
TU120171 lncRNA downstream 58410 18673464 ~ 18676017 (-) True G101483
TU120166 lncRNA downstream 82166 18650442 ~ 18652261 (-) True G101478
TU120176 lncRNA upstream 4421 18746145 ~ 18746365 (-) True G101488
TU120195 lncRNA upstream 21626 18763350 ~ 18763597 (-) True G101507
TU120196 lncRNA upstream 22237 18763961 ~ 18764168 (-) True G101508
TU120197 lncRNA upstream 23472 18765196 ~ 18765422 (-) True G101509
TU120209 lncRNA upstream 51895 18793619 ~ 18794802 (-) True G101521
XM_026932720.2 mRNA downstream 210201 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA downstream 210201 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA downstream 224878 18282619 ~ 18509549 (-) False rasgrf1
XM_034305505.1 mRNA downstream 225027 18282619 ~ 18509400 (-) False rasgrf1
XM_034305504.1 mRNA downstream 247598 18282619 ~ 18486829 (-) False rasgrf1
XM_026913714.2 mRNA upstream 568164 19309888 ~ 19333430 (-) True dhx34
XM_026913684.2 mRNA upstream 665326 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA upstream 665326 19407050 ~ 19496990 (-) False pik3c2a
XM_026913612.2 mRNA upstream 1309608 20051332 ~ 20054436 (-) True LOC113526513
XM_026913745.2 mRNA upstream 1473418 20215142 ~ 20292323 (-) True nectin1b
TU119855 other downstream 537621 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 647456 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3379790 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4387419 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 4945580 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 609038 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 1238345 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 2211878 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 2253617 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 3492979 22234703 ~ 22306769 (-) False si

Expression Profile